Literature DB >> 25134974

Halogen bonds in crystal engineering: like hydrogen bonds yet different.

Arijit Mukherjee1, Srinu Tothadi, Gautam R Desiraju.   

Abstract

The halogen bond is an attractive interaction in which an electrophilic halogen atom approaches a negatively polarized species. Short halogen atom contacts in crystals have been known for around 50 years. Such contacts are found in two varieties: type I, which is symmetrical, and type II, which is bent. Both are influenced by geometric and chemical considerations. Our research group has been using halogen atom interactions as design elements in crystal engineering, for nearly 30 years. These interactions include halogen···halogen interactions (X···X) and halogen···heteroatom interactions (X···B). Many X···X and almost all X···B contacts can be classified as halogen bonds. In this Account, we illustrate examples of crystal engineering where one can build up from previous knowledge with a focus that is provided by the modern definition of the halogen bond. We also comment on the similarities and differences between halogen bonds and hydrogen bonds. These interactions are similar because the protagonist atoms-halogen and hydrogen-are both electrophilic in nature. The interactions are distinctive because the size of a halogen atom is of consequence when compared with the atomic sizes of, for example, C, N, and O, unlike that of a hydrogen atom. Conclusions may be drawn pertaining to the nature of X···X interactions from the Cambridge Structural Database (CSD). There is a clear geometric and chemical distinction between type I and type II, with only type II being halogen bonds. Cl/Br isostructurality is explained based on a geometric model. In parallel, experimental studies on 3,4-dichlorophenol and its congeners shed light on the nature of halogen···halogen interactions and reveal the chemical difference between Cl and Br. Variable temperature studies also show differences between type I and type II contacts. In terms of crystal design, halogen bonds offer a unique opportunity in the strength, atom size and interaction gradation; this may be used in the design of ternary cocrystals. Structural modularity in which an entire crystal structure is defined as a combination of modules is rationalized on the basis of the intermediate strength of a halogen bond. The specific directionality of the halogen bond makes it a good tool to achieve orthogonality in molecular crystals. Mechanical properties can be tuned systematically by varying these orthogonally oriented halogen···halogen interactions. In a further development, halogen bonds are shown to play a systematic role in organization of LSAMs (long range synthon aufbau module), which are bigger structural units containing multiple synthons. With a formal definition in place, this may be the right time to look at differences between halogen bonds and hydrogen bonds and exploit them in more subtle ways in crystal engineering.

Entities:  

Year:  2014        PMID: 25134974     DOI: 10.1021/ar5001555

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  63 in total

Review 1.  Engineering Cocrystals of PoorlyWater-Soluble Drugs to Enhance Dissolution in Aqueous Medium.

Authors:  Indumathi Sathisaran; Sameer Vishvanath Dalvi
Journal:  Pharmaceutics       Date:  2018-07-31       Impact factor: 6.321

2.  A Halogen-Bond-Induced Triple Helicate Encapsulates Iodide.

Authors:  Casey J Massena; Nicholas B Wageling; Daniel A Decato; Enrique Martin Rodriguez; Ariana M Rose; Orion B Berryman
Journal:  Angew Chem Int Ed Engl       Date:  2016-07-14       Impact factor: 15.336

3.  Polarizable Empirical Force Field for Halogen-Containing Compounds Based on the Classical Drude Oscillator.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2018-01-31       Impact factor: 6.006

4.  Exploring the (Very Flat) Potential Energy Landscape of R-Br⋅⋅⋅π Interactions with Accurate CCSD(T) and SAPT Techniques.

Authors:  Kevin E Riley; Mariela Vazquez; Cole Umemura; Christopher Miller; Khanh-An Tran
Journal:  Chemistry       Date:  2016-10-27       Impact factor: 5.236

5.  Orthogonal Halogen-Bonding-Driven 3D Supramolecular Assembly of Right-Handed Synthetic Helical Peptides.

Authors:  Peng Teng; Geoffrey M Gray; Mengmeng Zheng; Sylvia Singh; Xiaopeng Li; Lukasz Wojtas; Arjan van der Vaart; Jianfeng Cai
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-30       Impact factor: 15.336

Review 6.  Hydrogen Bond Enhanced Halogen Bonds: A Synergistic Interaction in Chemistry and Biochemistry.

Authors:  Asia Marie S Riel; Rhianon K Rowe; Ethan N Ho; Anna-Carin C Carlsson; Anthony K Rappé; Orion B Berryman; Pui Shing Ho
Journal:  Acc Chem Res       Date:  2019-07-18       Impact factor: 22.384

7.  Solution and solid-phase halogen and C-H hydrogen bonding to perrhenate.

Authors:  Casey J Massena; Asia Marie S Riel; George F Neuhaus; Daniel A Decato; Orion B Berryman
Journal:  Chem Commun (Camb)       Date:  2015-01-28       Impact factor: 6.222

8.  Strength, character, and directionality of halogen bonds involving cationic halogen bond donors.

Authors:  Kevin E Riley; Khanh-An Tran
Journal:  Faraday Discuss       Date:  2017-10-13       Impact factor: 4.008

Review 9.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

10.  Theoretical, Solid-State, and Solution Quantification of the Hydrogen Bond-Enhanced Halogen Bond.

Authors:  Daniel A Decato; Asia Marie S Riel; James H May; Vyacheslav S Bryantsev; Orion B Berryman
Journal:  Angew Chem Int Ed Engl       Date:  2020-12-21       Impact factor: 15.336

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