Literature DB >> 28928124

Emerging mechanisms of long noncoding RNA function during normal and malignant hematopoiesis.

Juan R Alvarez-Dominguez1, Harvey F Lodish2,3,4.   

Abstract

Long noncoding RNAs (lncRNAs) are increasingly recognized as vital components of gene programs controlling cell differentiation and function. Central to their functions is an ability to act as scaffolds or as decoys that recruit or sequester effector proteins from their DNA, RNA, or protein targets. lncRNA-modulated effectors include regulators of transcription, chromatin organization, RNA processing, and translation, such that lncRNAs can influence gene expression at multiple levels. Here we review the current understanding of how lncRNAs help coordinate gene expression to modulate cell fate in the hematopoietic system. We focus on a growing number of mechanistic studies to synthesize emerging principles of lncRNA function, emphasizing how they facilitate diversification of gene programming during development. We also survey how disrupted lncRNA function can contribute to malignant transformation, highlighting opportunities for therapeutic intervention in specific myeloid and lymphoid cancers. Finally, we discuss challenges and prospects for further elucidation of lncRNA mechanisms.
© 2017 by The American Society of Hematology.

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Year:  2017        PMID: 28928124      PMCID: PMC5669209          DOI: 10.1182/blood-2017-06-788695

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  124 in total

1.  Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

Authors:  Juan R Alvarez-Dominguez; Wenqian Hu; Bingbing Yuan; Jiahai Shi; Staphany S Park; Austin A Gromatzky; Alexander van Oudenaarden; Harvey F Lodish
Journal:  Blood       Date:  2013-11-07       Impact factor: 22.113

Review 2.  Regulation of mammalian cell differentiation by long non-coding RNAs.

Authors:  Wenqian Hu; Juan R Alvarez-Dominguez; Harvey F Lodish
Journal:  EMBO Rep       Date:  2012-10-16       Impact factor: 8.807

3.  The kinase LRRK2 is a regulator of the transcription factor NFAT that modulates the severity of inflammatory bowel disease.

Authors:  Zhihua Liu; Jinwoo Lee; Scott Krummey; Wei Lu; Huaibin Cai; Michael J Lenardo
Journal:  Nat Immunol       Date:  2011-10-09       Impact factor: 25.606

4.  Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Authors:  Ariel A Bazzini; Timothy G Johnstone; Romain Christiano; Sebastian D Mackowiak; Benedikt Obermayer; Elizabeth S Fleming; Charles E Vejnar; Miler T Lee; Nikolaus Rajewsky; Tobias C Walther; Antonio J Giraldez
Journal:  EMBO J       Date:  2014-04-04       Impact factor: 11.598

5.  Mass-spectrometry-based draft of the human proteome.

Authors:  Mathias Wilhelm; Judith Schlegl; Hannes Hahne; Amin Moghaddas Gholami; Marcus Lieberenz; Mikhail M Savitski; Emanuel Ziegler; Lars Butzmann; Siegfried Gessulat; Harald Marx; Toby Mathieson; Simone Lemeer; Karsten Schnatbaum; Ulf Reimer; Holger Wenschuh; Martin Mollenhauer; Julia Slotta-Huspenina; Joos-Hendrik Boese; Marcus Bantscheff; Anja Gerstmair; Franz Faerber; Bernhard Kuster
Journal:  Nature       Date:  2014-05-29       Impact factor: 49.962

6.  Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing.

Authors:  Chun-Kan Chen; Mario Blanco; Constanza Jackson; Erik Aznauryan; Noah Ollikainen; Christine Surka; Amy Chow; Andrea Cerase; Patrick McDonel; Mitchell Guttman
Journal:  Science       Date:  2016-08-04       Impact factor: 47.728

7.  Control of somatic tissue differentiation by the long non-coding RNA TINCR.

Authors:  Markus Kretz; Zurab Siprashvili; Ci Chu; Dan E Webster; Ashley Zehnder; Kun Qu; Carolyn S Lee; Ross J Flockhart; Abigail F Groff; Jennifer Chow; Danielle Johnston; Grace E Kim; Robert C Spitale; Ryan A Flynn; Grace X Y Zheng; Subhadra Aiyer; Arjun Raj; John L Rinn; Howard Y Chang; Paul A Khavari
Journal:  Nature       Date:  2012-12-02       Impact factor: 49.962

Review 8.  RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts.

Authors:  Sarah Geisler; Jeff Coller
Journal:  Nat Rev Mol Cell Biol       Date:  2013-10-09       Impact factor: 94.444

9.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

10.  DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions.

Authors:  Wendy Huang; Benjamin Thomas; Ryan A Flynn; Samuel J Gavzy; Lin Wu; Sangwon V Kim; Jason A Hall; Emily R Miraldi; Charles P Ng; Frank Rigo; Frank W Rigo; Sarah Meadows; Nina R Montoya; Natalia G Herrera; Ana I Domingos; Fraydoon Rastinejad; Richard M Myers; Frances V Fuller-Pace; Richard Bonneau; Howard Y Chang; Oreste Acuto; Dan R Littman
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962

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  60 in total

Review 1.  Alternative splicing of lncRNAs in human diseases.

Authors:  Jiaxi Chen; Yawen Liu; Jingyu Min; Huizhi Wang; Feifan Li; Chunhui Xu; Aihua Gong; Min Xu
Journal:  Am J Cancer Res       Date:  2021-03-01       Impact factor: 6.166

Review 2.  Analytical ultracentrifuge: an ideal tool for characterization of non-coding RNAs.

Authors:  Maulik D Badmalia; M Quadir Siddiqui; Tyler Mrozowich; Darren L Gemmill; Trushar R Patel
Journal:  Eur Biophys J       Date:  2020-10-16       Impact factor: 1.733

Review 3.  Cytoplasmic functions of long noncoding RNAs.

Authors:  Ji Heon Noh; Kyoung Mi Kim; Waverly G McClusky; Kotb Abdelmohsen; Myriam Gorospe
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-03-08       Impact factor: 9.957

4.  BCALM (AC099524.1) Is a Human B Lymphocyte-Specific Long Noncoding RNA That Modulates B Cell Receptor-Mediated Calcium Signaling.

Authors:  Sarah C Pyfrom; Chaz C Quinn; Hannah K Dorando; Hong Luo; Jacqueline E Payton
Journal:  J Immunol       Date:  2020-06-22       Impact factor: 5.422

5.  A RNAscope whole mount approach that can be combined with immunofluorescence to quantify differential distribution of mRNA.

Authors:  Jennifer Kersigo; Ning Pan; Joseph D Lederman; Snehajyoti Chatterjee; Ted Abel; Gabriela Pavlinkova; Immaculada Silos-Santiago; Bernd Fritzsch
Journal:  Cell Tissue Res       Date:  2018-07-05       Impact factor: 5.249

6.  Role of Curcumin in Regulating Long Noncoding RNA Expression in Cancer.

Authors:  Abolfazl Amini; Parand Khadivar; Ali Ahmadnia; Morteza Alipour; Muhammed Majeed; Tannaz Jamialahmadi; Thozhukat Sathyapalan; Amirhossein Sahebkar
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

7.  Long non-coding RNA MEG3 regulates proliferation, apoptosis, and autophagy and is associated with prognosis in glioma.

Authors:  Haikang Zhao; Xin Wang; Xiaoyun Feng; Xiaoqiang Li; Li Pan; Jianrong Liu; Fenglu Wang; Zhihai Yuan; Lei Yang; Jun Yu; Rujuan Su; Yuelin Zhang; Lianting Ma
Journal:  J Neurooncol       Date:  2018-10-03       Impact factor: 4.130

8.  [Time-sequential expression of lnc AK079912 during adipose tissue development and browning in mice].

Authors:  Jiaqi Huang; Ru Jia; Xiaojing Wei; Xiao Luo
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2019-12-30

9.  Epigenetic and Epitranscriptomic Factors Make a Mark on Hematopoietic Stem Cell Development.

Authors:  Dionna M Kasper; Stefania Nicoli
Journal:  Curr Stem Cell Rep       Date:  2018-02-03

10.  lncRNA ST3GAL6‑AS1 promotes invasion by inhibiting hnRNPA2B1‑mediated ST3GAL6 expression in multiple myeloma.

Authors:  Ying Shen; Yuandong Feng; Fangmei Li; Yachun Jia; Yue Peng; Wanhong Zhao; Jinsong Hu; Aili He
Journal:  Int J Oncol       Date:  2021-03-02       Impact factor: 5.650

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