Literature DB >> 28919048

Control of Immune Cell Homeostasis and Function by lncRNAs.

Walter K Mowel1, Jonathan J Kotzin1, Sam J McCright2, Vanessa D Neal2, Jorge Henao-Mejia3.   

Abstract

The immune system is composed of diverse cell types that coordinate responses to infection and maintain tissue homeostasis. In each of these cells, extracellular cues determine highly specific epigenetic landscapes and transcriptional profiles to promote immunity while maintaining homeostasis. New evidence indicates that long non-coding RNAs (lncRNAs) play crucial roles in epigenetic and transcriptional regulation in mammals. Thus, lncRNAs have emerged as key regulatory molecules of immune cell gene expression programs in response to microbial and tissue-derived cues. We review here how lncRNAs control the function and homeostasis of cell populations during immune responses, emphasizing the diverse molecular mechanisms by which lncRNAs tune highly contextualized transcriptional programs. In addition, we discuss the new challenges faced in interrogating lncRNA mechanisms and function in the immune system.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28919048      PMCID: PMC5748345          DOI: 10.1016/j.it.2017.08.009

Source DB:  PubMed          Journal:  Trends Immunol        ISSN: 1471-4906            Impact factor:   16.687


  83 in total

1.  Genome-wide identification of long noncoding RNAs in CD8+ T cells.

Authors:  Ken C Pang; Marcel E Dinger; Tim R Mercer; Lorenzo Malquori; Sean M Grimmond; Weisan Chen; John S Mattick
Journal:  J Immunol       Date:  2009-06-15       Impact factor: 5.422

2.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

3.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

4.  LincRNA-Cox2 modulates TNF-α-induced transcription of Il12b gene in intestinal epithelial cells through regulation of Mi-2/NuRD-mediated epigenetic histone modifications.

Authors:  Qiang Tong; Ai-Yu Gong; Xin-Tian Zhang; Chengchi Lin; Shibin Ma; Jing Chen; Guoku Hu; Xian-Ming Chen
Journal:  FASEB J       Date:  2015-11-17       Impact factor: 5.191

5.  A potential suppressive effect of natural antisense IL-1β RNA on lipopolysaccharide-induced IL-1β expression.

Authors:  Jiawei Lu; Xiurong Wu; Mao Hong; Peter Tobias; Jiahuai Han
Journal:  J Immunol       Date:  2013-05-15       Impact factor: 5.422

6.  Interleukin-1 type II receptor: a decoy target for IL-1 that is regulated by IL-4.

Authors:  F Colotta; F Re; M Muzio; R Bertini; N Polentarutti; M Sironi; J G Giri; S K Dower; J E Sims; A Mantovani
Journal:  Science       Date:  1993-07-23       Impact factor: 47.728

7.  Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading.

Authors:  Keith T Gagnon; Liande Li; Bethany A Janowski; David R Corey
Journal:  Nat Protoc       Date:  2014-07-31       Impact factor: 13.491

8.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

9.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

Review 10.  Considerations when investigating lncRNA function in vivo.

Authors:  Andrew R Bassett; Asifa Akhtar; Denise P Barlow; Adrian P Bird; Neil Brockdorff; Denis Duboule; Anne Ephrussi; Anne C Ferguson-Smith; Thomas R Gingeras; Wilfried Haerty; Douglas R Higgs; Eric A Miska; Chris P Ponting
Journal:  Elife       Date:  2014-08-14       Impact factor: 8.140

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  43 in total

1.  The long noncoding RNA Morrbid regulates CD8 T cells in response to viral infection.

Authors:  Jonathan J Kotzin; Fany Iseka; Jasmine Wright; Megha G Basavappa; Megan L Clark; Mohammed-Alkhatim Ali; Mohamed S Abdel-Hakeem; Tanner F Robertson; Walter K Mowel; Leonel Joannas; Vanessa D Neal; Sean P Spencer; Camille M Syrett; Montserrat C Anguera; Adam Williams; E John Wherry; Jorge Henao-Mejia
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-28       Impact factor: 11.205

Review 2.  Long noncoding RNAs and the regulation of innate immunity and host-virus interactions.

Authors:  Megha Basavappa; Sara Cherry; Jorge Henao-Mejia
Journal:  J Leukoc Biol       Date:  2019-02-28       Impact factor: 4.962

Review 3.  Emerging role of lncRNAs in the normal and diseased intestinal barrier.

Authors:  Jie Chen; Jianhua Wan; Jianfang Ye; Liang Xia; Nonghua Lu
Journal:  Inflamm Res       Date:  2018-07-14       Impact factor: 4.575

4.  The Putative Association of TOB1-AS1 Long Non-coding RNA with Immune Tolerance: A Study on Multiple Sclerosis Patients.

Authors:  Reyhaneh Dehghanzad; Majid Pahlevan Kakhki; Asieh Alikhah; Mohammad Ali Sahraian; Mehrdad Behmanesh
Journal:  Neuromolecular Med       Date:  2019-09-03       Impact factor: 3.843

5.  LINC01140 Alleviates the Oxidized Low-Density Lipoprotein-Induced Inflammatory Response in Macrophages via Suppressing miR-23b.

Authors:  Liping He; Xingsheng Zhao; Leping He
Journal:  Inflammation       Date:  2020-02       Impact factor: 4.092

6.  The expression of GAS5, THRIL, and RMRP lncRNAs is increased in T cells of patients with rheumatoid arthritis.

Authors:  Mozhgan Moharamoghli; Vahideh Hassan-Zadeh; Elahe Dolatshahi; Zahra Alizadeh; Ali Farazmand
Journal:  Clin Rheumatol       Date:  2019-07-25       Impact factor: 2.980

Review 7.  Long non-coding RNAs in immune regulation and their potential as therapeutic targets.

Authors:  Dinesh Babu Uthaya Kumar; Adam Williams
Journal:  Int Immunopharmacol       Date:  2020-02-12       Impact factor: 4.932

8.  BCALM (AC099524.1) Is a Human B Lymphocyte-Specific Long Noncoding RNA That Modulates B Cell Receptor-Mediated Calcium Signaling.

Authors:  Sarah C Pyfrom; Chaz C Quinn; Hannah K Dorando; Hong Luo; Jacqueline E Payton
Journal:  J Immunol       Date:  2020-06-22       Impact factor: 5.422

9.  Multi-leveled suppression of p53 function by HuR IncRNPs.

Authors:  Jen-Hao Yang; Myriam Gorospe
Journal:  Noncoding RNA Investig       Date:  2018-01-17

10.  NEAT1 paraspeckle promotes human hepatocellular carcinoma progression by strengthening IL-6/STAT3 signaling.

Authors:  Shuai Wang; Qian Zhang; Qinlan Wang; Qicong Shen; Xiang Chen; Zhenyang Li; Ye Zhou; Jin Hou; Bowen Xu; Nan Li; Xuetao Cao
Journal:  Oncoimmunology       Date:  2018-08-06       Impact factor: 8.110

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