| Literature DB >> 28916595 |
Gregory David Scott1, Susan K Atwater1, Dita A Gratzinger1.
Abstract
AIMS: To create clinically relevant normative flow cytometry data for understudied benign lymph nodes and characterise outliers.Entities:
Keywords: benign; flow cytometry; immunophenotype; informatics; lymph node
Mesh:
Substances:
Year: 2017 PMID: 28916595 PMCID: PMC5800326 DOI: 10.1136/jclinpath-2017-204687
Source DB: PubMed Journal: J Clin Pathol ISSN: 0021-9746 Impact factor: 3.411
Lymphocyte gate: normative distribution of B cell-related, T cell-related and NK cell-related epitopes
| Median | (Q1, Q3) | (5%, 95%) | N | % CD19 | (Q1, Q3) | |
| % CD45 | 90 | (84, 95) | (55, 97) | 368 | ||
| CD3:CD19 | 1.8 | (1.0, 3.1) | (0.5, 6.9) | 359 | ||
| B cell antigens | ||||||
| CD19 | 32 | (20, 44) | (11, 60) | 378 | ||
| CD20 | 31 | (22, 43) | (11, 61) | 371 | 100 | (94.1, 104) |
| CD22 | 36 | (25, 48) | (13, 62) | 331 | 110 | (101.1, 125.7) |
| FMC7 | 17 | (10, 28) | (3, 43) | 349 | 57.1 | (38.5, 77.7) |
| CD23 | 25 | (15, 33) | (5, 50) | 349 | 77.8 | (57.7, 96.6) |
| CD10 | 3 | (1, 7) | (0, 20) | 371 | 9.8 | (5, 22.7) |
| CD38+CD19+ | 25 | (15, 36) | (7, 51) | 361 | 83.8 | (69.6, 93.3) |
| CD5+CD19+ | 3 | (1, 5) | (0, 10) | 373 | 8.8 | (5, 14.7) |
| Kappa+ | 17 | (12, 24) | (7, 35) | 371 | 55.6 | (50, 60.4) |
| Lambda+ | 11 | (8, 16) | (5, 23) | 370 | 36.8 | (32.8, 40.5) |
| Kappa:lambda | 1.5 | (1.3, 1.7) | (1.1, 2.2) | 370 | ||
| T cell antigens | %CD3 | |||||
| CD3 | 60 | (48, 71) | (31, 84) | 364 | ||
| CD4 | 45 | (37, 57) | (23, 70) | 365 | 80.3 | (72.3, 86.7) |
| CD8 | 13 | (9, 19) | (4, 31) | 365 | 22.5 | (16.3, 30.7) |
| CD5 | 64 | (52, 75) | (36, 86) | 373 | 105.2 | (100, 111.4) |
| CD2 | 60 | (47, 71) | (29, 82) | 281 | 98.5 | (95.6, 101.3) |
| CD7 | 58 | (44, 69) | (31, 80) | 282 | 95.8 | (91.7, 98.9) |
| CD16+CD3+ | 0 | (0, 0) | (0, 1) | 268 | 0 | (0, 0) |
| CD56+CD3+ | 0 | (0, 1) | (0, 2) | 277 | 0 | (0, 1.3) |
| CD57+CD3+ | 3 | (2, 5) | (1, 10.8) | 265 | 5 | (2.6, 10.3) |
| CD4:CD8 | 3.5 | (2.4, 5.3) | (1.1, 10.7) | 364 | ||
| CD7-negative T/NK (% CD2) | 2.7% | (−1.2, 6.5) | (−10, 14) | 279 | ||
| NK cell antigens | ||||||
| CD16+CD3− | 0 | (0, 0) | (0, 1) | 267 | ||
| CD56+CD3− | 1 | (0, 1) | (0, 4) | 266 | ||
| CD57+CD3− | 0 | (0, 0) | (0, 1) | 265 |
NK, natural killer.
Figure 2Event percentages for T cell-related/NK cell-related antigens in the lymphocyte gate (left) and large cell gate (right) are plotted as jittered dotplots with overlying box-and-whisker plots demonstrating data median and quartiles. NK, natural killer.
Large cell gate: normative distribution of B cell-related, T cell-related and NK cell-related epitopes
| Median | (Q1, Q3) | (5%, 95%) | N | % CD19 | (Q1, Q3) | |
| % CD45 | 5 | (3, 8) | (2, 16) | 299 | ||
| CD3:CD19 | 0.4 | (0.2, 0.7) | (0.1, 1.6) | 289 | ||
| B cell antigens | ||||||
| CD19 | 68 | (49, 80) | (14, 91) | 302 | ||
| CD20 | 68 | (51, 80) | (11, 91) | 296 | 97.8 | (92.7, 105.5) |
| CD22 | 56 | (35, 73) | (16, 89) | 274 | 86.3 | (69, 97.7) |
| FMC7 | 40 | (20, 60) | (6, 79) | 278 | 61.4 | (39.5, 82) |
| CD23 | 28 | (17, 41) | (5, 58) | 278 | 45.9 | (29.3, 62.3) |
| CD10 | 17 | (6, 38) | (2, 69) | 296 | 29.8 | (13.7, 55.8) |
| CD38+CD19+ | 59 | (40, 72) | (9, 89) | 289 | 92.6 | (82.3, 98.1) |
| CD5+CD19+ | 7 | (3, 13) | (1, 25) | 296 | 11.8 | (6.3, 21.6) |
| Kappa+ | 42 | (30, 53) | (7, 72) | 299 | 64 | (53.4, 77.5) |
| Lambda+ | 31 | (20, 41) | (5, 56) | 300 | 46.6 | (38.2, 60.1) |
| Kappa:lambda | 1.3 | (1.1, 1.6) | (1, 2.3) | 298 | ||
| T cell antigens | ||||||
| CD3 | 27 | (19, 39) | (10, 53) | 291 | ||
| CD4 | 51 | (35, 67) | (14, 82) | 288 | ||
| CD8 | 10 | (6, 18) | (2, 35) | 288 | ||
| CD5 | 20 | (11, 30) | (5, 52) | 296 | ||
| CD2 | 30 | (18, 41) | (8, 63) | 238 | ||
| CD7 | 24 | (15, 35) | (6, 54) | 239 | ||
| CD16+CD3+ | 1 | (0, 2) | (0, 6) | 229 | ||
| CD56+CD3+ | 2 | (1, 3) | (0, 8) | 231 | ||
| CD57+CD3+ | 6 | (3, 10) | (1, 23.6) | 229 | ||
| CD4:CD8 | 4.5 | (3, 7.2) | (1.4, 14.5) | 288 | ||
| NK cell antigens | ||||||
| CD16+CD3− | 1 | (0, 3) | (0, 10) | 231 | ||
| CD56+CD3− | 3 | (1, 5) | (0, 11.1) | 230 | ||
| CD57+CD3− | 0 | (0, 1) | (0, 2) | 229 |
NK, natural killer.
Immunophenotype outliers with benign diagnosis and negative for lymphoma on follow-up: demographics and related markers
| Kappa:lambda ratio >3:1 or <1:1 | N | M:F | Age | K:L (LG) | K:L (LCG) | CD10 (LG) | CD10 (LCG) |
| Lymphocyte K:L <1:1 | 5 | 2:3 | 38.6 | 0.7 (0.4–0.9) | 1 (0.3–1) No data | 36 (9-71)† | 43 (16–64) |
| Large cell K:L <1:1 | 17 | 7:9 | 25.1 | 1.1 (0.4–1.5) | 0.9 (0.3–0.9) | 11 (0–50) | 36 (5–86) |
| CD10/19 outliers* | N | M:F | Age | K:L (LG) | K:L (LCG) | CD10 (LG) | CD10 (LCG) |
| Lymphocyte gate | 5 | 3:2 | 39.6 | 1.8 (1.5–3.1) | 1.4 (1.3–2.6) | 74 (69–90) | 84 (84–94) |
| Large cell gate | 5 | 4:1 | 29.5 | 1.6 (1.0–1.7) | 1.4 (1–2.6) | 60 (14–69) | 94 (88–97) |
| CD5/19 outliers* | N | M:F | Age | K:L (LG) | K:L (LCG) | CD5 (LG) | CD5 (LCG) |
| Lymphocyte gate | 5 | 4:1 | 13† | 1.5 (1.2–1.8) | 1.1 (0.9–1.2) | 41 (40–57) | 40 (27-65)† |
| Large cell gate | 5 | 3:2 | 31.4 | 1.2 (1.1–1.4) | 1.2 (1.1–1.4) | 31 (0–57) | 65 (57–100) |
| CD4:CD8 >10:1/<1:1 | N | M:F | Age | CD4:CD8 | CD7 loss | CD56+CD3+ | CD57+CD3+ |
| CD4:CD8 <1:1 | 10 | 7:3 | 31 | 0.7 (0.3–0.9) | −1.5 (−13 to 29) | 0 (0–7) | 1 (0–25) |
| CD4:CD8 >10:1 | 10 | 5:5 | 30.5 | 17.1 (14.6–36) | 0 (−4 to 12) | 0 (0–0) | 3 (1–7) |
| CD7 loss outliers* | N | M:F | Age | CD4:CD8 | CD7 loss | CD56+CD3+ | CD57+CD3+ |
| 10 | 4:6 | 36.5 | 3.5 (0.7–6.8) | 28 (16–80) | 0.5 (0–4) | 4 (1–16) |
*Outlier defined as greater than 1.5 times the IQR above the third quartile. One overlapping case between kappa:lambda and CD10, one between kappa:lambda and CD5, one between kappa:lambda LG and LCG.
†Significant difference compared with all non-outliers, p<0.01 (Mann-Whitney-Wilcoxon test).
K:L, kappa:lambda; LCG, large cell gate; LG, lymphocyte gate; M:F, male-to-female ratio; N, sample size.
Immunophenotype outliers with benign diagnosis and negative for lymphoma on follow-up: histological and clinical features
| Reactive pattern/diagnosis | IS TRA | AI INF | F/U (years) | F/U LYM | |||||||
| Neg | RFH | FL | PTGC | PH | DL | Other | |||||
| Kappa:lambda ratio | |||||||||||
| Lymphocyte K:L <1:1 | 4 | 1 | 1 | 1 | SD (n=1) | 2 | 2 | 4.2 (1–7) | – | ||
| Large cell K:L <1:1 | 1 | 11 | 1 | 1 | AH (n=1), KD (n=1), CD (n=1), GL/IFXN (n=2) | 3 | 5 | 2.8 (1 month–12 years) | – | ||
| CD10/19 outliers* | |||||||||||
| Lymphocyte gate | 5 | 2 | HIV-LA (n=2) | 4 | 1 | 3.6 (2–6) | – | ||||
| Large cell gate | 5 | 1 | 1 | HIV-LA (n=1) | 3 | 2 | 4.8 (2–7) | – | |||
| CD5/19 outliers* | |||||||||||
| Lymphocyte gate | 4 | 1 | 2 | 4.2 (1–9) | – | ||||||
| Large cell gate | 2 | 3 | SD (n=1) | 1 | 2 | 4 (1–8) | – | ||||
| CD4:CD8 >10:1/<1:1 | |||||||||||
| CD4:CD8 <1:1 | 3 | 2 | 2 | 1 | KD (n=2), CD (n=1), GL (n=1), HIV-LA (n=1) | 5 | 4 | 3.3 (2 months–9 years) | – | ||
| CD4:CD8 >10:1 | 2 | 6 | SD (n=1) | 7 | 2 | 4.6 (1–8) | – | ||||
| CD7 loss outliers* | |||||||||||
| 1 | 6 | 1 | 1 | 2 | LG (n=1), HIV-LA (n=1) | 5 | 4 | 2.5 (4 months–7 years) | – | ||
*Outlier defined as greater than 1.5 times the IQR above the third quartile. One overlapping case between kappa:lambda and CD10, one between kappa:lambda and CD5, one between kappa:lambda lymphocyte gate (LG) and large cell gate (LCG).
Clinical acronyms: AI INF, autoimmune or inflammatory disease; F/U LYM, subsequent lymphoma on follow-up; F/U (years), duration of follow-up in years; INFL, inflammatory condition; IS TRA, immunosuppressed or (solid organ or marrow) transplant.
Diagnosis/Pattern acronyms: AH, angiomyomatous hamartoma; CD, Castleman disease; DL, dermatopathic lymphadenopathy; FL, follicular lysis; GL, granulomatous lymphadenitis; HIV-LA, HIV lymphadenitis; IFXN, infectious lymphadenitis; KD, Kikuchi disease; LG, lipogranulomatosis; Neg, negative; PH, paracortical hyperplasia; PTGC, progressive transformation of germinal centres; RFH, reactive follicular hyperplasia; SD, sarcoidosis.