Literature DB >> 28911221

Chemical Basis for Deuterium Labeling of Fat and NADPH.

Zhaoyue Zhang1,2, Li Chen1,2, Ling Liu1,2, Xiaoyang Su3, Joshua D Rabinowitz1,2.   

Abstract

Much understanding of metabolism is based on monitoring chemical reactions in cells with isotope tracers. For this purpose, 13C is well suited due to its stable incorporation into biomolecules and minimal kinetic isotope effect. For redox reactions, deuterium tracing can provide additional information. To date, studies examining NADPH production with deuterated carbon sources have failed to account for roughly half of NADPH's redox active hydrogen. We show the missing hydrogen is the result of enzyme-catalyzed H-D exchange between water and NADPH. Though isolated NADPH does not undergo H-D exchange with water, such exchange is catalyzed by Flavin enzymes and occurs rapidly in cells. Correction for H-D exchange is required for accurate assessment of biological sources of NADPH's high energy electrons. Deuterated water (D2O) is frequently used to monitor fat synthesis in vivo, but the chemical pathway of the deuterons into fat remains unclear. We show D2O labels fatty acids primarily via NADPH. Knowledge of this route enables calculation, without any fitting parameters, of the mass isotopomer distributions of fatty acids from cells grown in D2O. Thus, knowledge of enzyme-catalyzed H-D exchange between water and NADPH enables accurate interpretation of deuterium tracing studies of redox cofactor and fatty acid metabolism.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28911221      PMCID: PMC5748894          DOI: 10.1021/jacs.7b08012

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Mechanism of action of a flavin-containing monooxygenase.

Authors:  Subramaniam Eswaramoorthy; Jeffrey B Bonanno; Stephen K Burley; Subramanyam Swaminathan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-15       Impact factor: 11.205

2.  A study of the source of liver fat using deuterium as an indicator.

Authors:  H M Barrett; C H Best; J H Ridout
Journal:  J Physiol       Date:  1938-09-16       Impact factor: 5.182

3.  Distinct Metabolic States Can Support Self-Renewal and Lipogenesis in Human Pluripotent Stem Cells under Different Culture Conditions.

Authors:  Hui Zhang; Mehmet G Badur; Ajit S Divakaruni; Seth J Parker; Christian Jäger; Karsten Hiller; Anne N Murphy; Christian M Metallo
Journal:  Cell Rep       Date:  2016-07-28       Impact factor: 9.423

4.  Extraction and Quantitation of Nicotinamide Adenine Dinucleotide Redox Cofactors.

Authors:  Wenyun Lu; Lin Wang; Li Chen; Sheng Hui; Joshua D Rabinowitz
Journal:  Antioxid Redox Signal       Date:  2017-07-19       Impact factor: 8.401

5.  Acute Activation of Oxidative Pentose Phosphate Pathway as First-Line Response to Oxidative Stress in Human Skin Cells.

Authors:  Andreas Kuehne; Hila Emmert; Joern Soehle; Marc Winnefeld; Frank Fischer; Horst Wenck; Stefan Gallinat; Lara Terstegen; Ralph Lucius; Janosch Hildebrand; Nicola Zamboni
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

6.  Development of a novel method for measuring in vivo breast epithelial cell proliferation in humans.

Authors:  Lisa M Misell; E Shelley Hwang; Alfred Au; Laura Esserman; Marc K Hellerstein
Journal:  Breast Cancer Res Treat       Date:  2005-02       Impact factor: 4.872

7.  Malic enzyme tracers reveal hypoxia-induced switch in adipocyte NADPH pathway usage.

Authors:  Ling Liu; Supriya Shah; Jing Fan; Junyoung O Park; Kathryn E Wellen; Joshua D Rabinowitz
Journal:  Nat Chem Biol       Date:  2016-03-21       Impact factor: 15.040

8.  Overexpression, purification, and mechanistic study of UDP-N-acetylenolpyruvylglucosamine reductase.

Authors:  T E Benson; J L Marquardt; A C Marquardt; F A Etzkorn; C T Walsh
Journal:  Biochemistry       Date:  1993-03-02       Impact factor: 3.162

9.  Reduced flavin: NMR investigation of N5-H exchange mechanism, estimation of ionisation constants and assessment of properties as biological catalyst.

Authors:  Peter Macheroux; Sandro Ghisla; Christoph Sanner; Heinz Rüterjans; Franz Müller
Journal:  BMC Biochem       Date:  2005-11-25       Impact factor: 4.059

10.  Quantitative flux analysis reveals folate-dependent NADPH production.

Authors:  Jing Fan; Jiangbin Ye; Jurre J Kamphorst; Tomer Shlomi; Craig B Thompson; Joshua D Rabinowitz
Journal:  Nature       Date:  2014-05-04       Impact factor: 49.962

View more
  30 in total

1.  Peripheral TREM1 responses to brain and intestinal immunogens amplify stroke severity.

Authors:  Qingkun Liu; Emily M Johnson; Rachel K Lam; Qian Wang; Hong Bo Ye; Edward N Wilson; Paras S Minhas; Ling Liu; Michelle S Swarovski; Stephanie Tran; Jing Wang; Swapnil S Mehta; Xi Yang; Joshua D Rabinowitz; Samuel S Yang; Mehrdad Shamloo; Christoph Mueller; Michelle L James; Katrin I Andreasson
Journal:  Nat Immunol       Date:  2019-07-01       Impact factor: 25.606

2.  Macrophage de novo NAD+ synthesis specifies immune function in aging and inflammation.

Authors:  Paras S Minhas; Ling Liu; Peter K Moon; Amit U Joshi; Christopher Dove; Siddhita Mhatre; Kevin Contrepois; Qian Wang; Brittany A Lee; Michael Coronado; Daniel Bernstein; Michael P Snyder; Marie Migaud; Ravindra Majeti; Daria Mochly-Rosen; Joshua D Rabinowitz; Katrin I Andreasson
Journal:  Nat Immunol       Date:  2018-11-26       Impact factor: 25.606

3.  2H/1H variation in microbial lipids is controlled by NADPH metabolism.

Authors:  Reto S Wijker; Alex L Sessions; Tobias Fuhrer; Michelle Phan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-31       Impact factor: 11.205

4.  Glucose-6-Phosphate Dehydrogenase Is Not Essential for K-Ras-Driven Tumor Growth or Metastasis.

Authors:  Jonathan M Ghergurovich; Mark Esposito; Zihong Chen; Joshua Z Wang; Vrushank Bhatt; Taijin Lan; Eileen White; Yibin Kang; Jessie Yanxiang Guo; Joshua D Rabinowitz
Journal:  Cancer Res       Date:  2020-07-13       Impact factor: 12.701

5.  Transfer of glucose hydrogens via acetyl-CoA, malonyl-CoA, and NADPH to fatty acids during de novo lipogenesis.

Authors:  Getachew Debas Belew; Joao Silva; Joao Rito; Ludgero Tavares; Ivan Viegas; Jose Teixeira; Paulo J Oliveira; Maria Paula Macedo; John G Jones
Journal:  J Lipid Res       Date:  2019-10-01       Impact factor: 5.922

6.  Diet-Induced Circadian Enhancer Remodeling Synchronizes Opposing Hepatic Lipid Metabolic Processes.

Authors:  Dongyin Guan; Ying Xiong; Patricia C Borck; Cholsoon Jang; Paschalis-Thomas Doulias; Romeo Papazyan; Bin Fang; Chunjie Jiang; Yuxiang Zhang; Erika R Briggs; Wenxiang Hu; David Steger; Harry Ischiropoulos; Joshua D Rabinowitz; Mitchell A Lazar
Journal:  Cell       Date:  2018-07-26       Impact factor: 41.582

7.  Lipokine 5-PAHSA Is Regulated by Adipose Triglyceride Lipase and Primes Adipocytes for De Novo Lipogenesis in Mice.

Authors:  Veronika Paluchova; Marina Oseeva; Marie Brezinova; Tomas Cajka; Kristina Bardova; Katerina Adamcova; Petr Zacek; Kristyna Brejchova; Laurence Balas; Hana Chodounska; Eva Kudova; Renate Schreiber; Rudolf Zechner; Thierry Durand; Martin Rossmeisl; Nada A Abumrad; Jan Kopecky; Ondrej Kuda
Journal:  Diabetes       Date:  2019-12-05       Impact factor: 9.461

8.  NADPH production by the oxidative pentose-phosphate pathway supports folate metabolism.

Authors:  Li Chen; Zhaoyue Zhang; Atsushi Hoshino; Henry D Zheng; Michael Morley; Zoltan Arany; Joshua D Rabinowitz
Journal:  Nat Metab       Date:  2019-03-11

Review 9.  Metabolomics and Isotope Tracing.

Authors:  Cholsoon Jang; Li Chen; Joshua D Rabinowitz
Journal:  Cell       Date:  2018-05-03       Impact factor: 41.582

10.  Combinatorial CRISPR-Cas9 Metabolic Screens Reveal Critical Redox Control Points Dependent on the KEAP1-NRF2 Regulatory Axis.

Authors:  Dongxin Zhao; Mehmet G Badur; Jens Luebeck; Jose H Magaña; Amanda Birmingham; Roman Sasik; Christopher S Ahn; Trey Ideker; Christian M Metallo; Prashant Mali
Journal:  Mol Cell       Date:  2018-02-15       Impact factor: 17.970

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.