| Literature DB >> 28881807 |
Lijun Liu1,2, Yao Zhang1,2, Zhiying Zhang1,2, Yiduo Zhao1,2, Xiaowei Fan1,2, Lifeng Ma1,2, Yuan Zhang1,2, Haijin He1,2, Longli Kang1,2.
Abstract
High altitude polycythemia (HAPC) refers to the long-term living in the plateau of the hypoxia environment is not accustomed to cause red blood cell hyperplasia. The pathological changes are mainly the various organs and tissue congestion, blood stasis and hypoxia damage. Although chronic hypoxia is the main cause of HAPC, the related molecular mechanisms remain largely unclear. This study aims to explore the genetic basis of HAPC in the Chinese Han and Tibetan populations. We enrolled 100 patients (70 Han, 30 Tibetan) with HAPC and 100 healthy control subjects (30 Han, 70 Tibetan). To explore the hereditary basis of HAPC and investigate the association between EPHA2 with AGT and HAPC in Chinese Han and Tibetan populations. Using the Chi-squared test and analyses of genetic models, rs2291804, rs2291805, rs3768294, rs3754334, rs6603856, rs6669624, rs11260742, rs13375644 and rs10907223 in EPHA2, and rs699, rs4762 and rs5051 in AGT showed associations with reduced HAPC susceptibility in Han populations. Additionally, in Tibetan populations, rs2478523 in AGT showed an increased the risk of HAPC. Our study suggest that polymorphisms in the EPHA2 and AGT correlate with susceptibility to HAPC in Chinese Han and Tibetan populations.Entities:
Keywords: AGT; EPHA2; case-control study; gene polymorphisms; high altitude polycythemia
Year: 2017 PMID: 28881807 PMCID: PMC5581106 DOI: 10.18632/oncotarget.18384
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Basic characteristics of the control individuals and patients with high altitude polycythemia
| Variables | Han | Tibetan | ||
|---|---|---|---|---|
| Case (n=70) | Control (n=30) | Case (n=70) | Control (n=30) | |
| Sex | ||||
| Male | 35 | 15 | 35 | 15 |
| Female | 35 | 15 | 35 | 15 |
Basic information of candidate SNPs in Han subjects
| SNP_ID | Gene | Alleles A/B | Case (N) | HWE Case | Control (N) | HWE Control | OR (95% CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AB | BB | AA | AB | BB | |||||||
| rs2230597 | EPHA2 | G/A | 4 | 21 | 45 | 0.470 | 3 | 5 | 22 | 0.106 | 1.422(0.627-3.229) | 0.398 |
| rs6678616 | C/T | 0 | 4 | 66 | 1.000 | 1 | 5 | 24 | 1.000 | 0.312(0.081-1.206) | 0.076 | |
| rs2291804 | C/T | 0 | 3 | 67 | 1.000 | 1 | 8 | 21 | 1.000 | 0.137(0.035-0.536) | ||
| rs35127370 | C/T | 0 | 13 | 57 | 1.000 | 1 | 7 | 22 | 1.000 | 0.746(0.281-1.976) | 0.554 | |
| rs2291805 | C/T | 0 | 13 | 57 | 1.000 | 2 | 13 | 15 | 0.636 | 0.293(0.129-0.665) | ||
| rs3768294 | G/A | 0 | 14 | 56 | 1.000 | 2 | 14 | 14 | 0.390 | 0.291(0.131-0.647) | ||
| rs6678618 | C/T | 0 | 4 | 66 | 1.000 | 1 | 5 | 24 | 1.000 | 0.311(0.080-1.260) | 0.076 | |
| rs6603883 | G/A | 1 | 17 | 52 | 1.000 | 1 | 8 | 21 | 1.000 | 0.981(0.403-2.388) | 0.967 | |
| rs3754334 | G/A | 0 | 20 | 50 | 0.337 | 2 | 15 | 13 | 0.370 | 0.402(0.192-0.840) | ||
| rs6603856 | G/A | 0 | 13 | 57 | 1.000 | 2 | 12 | 16 | 1.000 | 0.321(0.140-0.737) | ||
| rs6669624 | G/A | 0 | 12 | 58 | 1.000 | 2 | 10 | 18 | 1.000 | 0.359(0.150-0.856) | ||
| rs11260742 | T/C | 1 | 13 | 56 | 0.568 | 3 | 11 | 16 | 1.000 | 0.344(0.155-0.761) | ||
| rs13375644 | C/T | 3 | 14 | 53 | 1.000 | 4 | 11 | 15 | 1.000 | 0.296(0.123-0.713) | ||
| rs10907223 | G/A | 0 | 13 | 57 | 1.000 | 2 | 11 | 17 | 1.000 | 0.354(0.152-0.821) | ||
| rs699 | AGT | G/A | 1 | 23 | 46 | 0.680 | 2 | 17 | 11 | 0.198 | 0.446(0.222-0.897) | |
| rs11122576 | T/C | 7 | 35 | 28 | 0.600 | 3 | 10 | 17 | 0.644 | 1.692(0.845-3.389) | 0.135 | |
| rs5046 | G/A | 3 | 25 | 42 | 1.000 | 1 | 8 | 21 | 1.000 | 1.778(0.763-4.143) | 0.179 | |
| rs3789679 | G/A | 7 | 37 | 26 | 0.594 | 3 | 10 | 17 | 0.604 | 1.846(0.904-3.769) | 0.090 | |
| rs1926722 | C/A | 11 | 31 | 28 | 0.617 | 3 | 12 | 15 | 0.662 | 1.469(0.759-2.844) | 0.252 | |
| rs4762 | G/A | 1 | 5 | 64 | 0.146 | 2 | 8 | 20 | 1.000 | 0.253(0.091-0.701) | ||
| rs28730748 | G/A | 3 | 6 | 61 | 0.196 | 1 | 7 | 22 | 1.000 | 0.455(0.157-1.321) | 0.140 | |
| rs2071406 | A/G | 1 | 19 | 50 | 1.000 | 2 | 8 | 20 | 1.000 | 0.847(0.372-1.931) | 0.693 | |
| rs5050 | T/G | 1 | 13 | 56 | 0.568 | 2 | 8 | 20 | 1.000 | 0.576(0.242-1.37) | 0.208 | |
| rs11122575 | A/G | 8 | 15 | 47 | 0.000 | 2 | 10 | 18 | 1.000 | 1.277(0.554-2.942) | 0.565 | |
| rs3827749 | G/A | 3 | 28 | 39 | 0.744 | 3 | 14 | 13 | 1.000 | 0.609(0.313-1.185) | 0.143 | |
| rs5051 | T/C | 1 | 23 | 46 | 0.680 | 2 | 16 | 12 | 0.413 | 0.413(0.207-0.826) | ||
| rs11568020 | C/T | 0 | 7 | 63 | 1.000 | 0 | 2 | 28 | 1.000 | 3.000(0.361-24.95) | 0.287 | |
| rs2478523 | A/G | 8 | 28 | 19 | 0.782 | 5 | 13 | 12 | 1.000 | 0.841(0.431-1.638) | 0.610 | |
SNP: Single-nucleotide polymorphism; OR: odds ratio; 95% CI: 95% confidence interval; HWE: Hardy-Weinberg equilibrium;
Site with HWE p≤0.05 excluded; p<0.05 indicates statistical significance for allele model.
Basic information of candidate SNPs in Tibetan subjects
| SNP_ID | Gene | Alleles A/B | Case (N) | HWE Case | Control (N) | HWE Control | OR (95% CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AB | BB | AA | AB | BB | |||||||
| rs2230597 | EPHA2 | G/A | 0 | 22 | 48 | 0.195 | 0 | 9 | 21 | 1.000 | 1.056(0.455-2.453) | 0.898 |
| rs6678616 | C/T | 0 | 3 | 67 | 1.000 | 0 | 2 | 28 | 1.000 | 0.635(0.103-3.901) | 0.621 | |
| rs2291804 | C/T | 0 | 2 | 68 | 1.000 | 0 | 0 | 30 | 1.000 | 0.264(0.198-3.578) | 0.352 | |
| rs35127370 | C/T | 0 | 14 | 56 | 1.000 | 0 | 6 | 24 | 1.000 | 1.000(0.365-2.74) | 1.000 | |
| rs2291805 | C/T | 1 | 10 | 59 | 0.402 | 1 | 4 | 25 | 0.241 | 0.844(0.301-2.364) | 0.746 | |
| rs3768294 | G/A | 3 | 13 | 54 | 0.480 | 3 | 4 | 23 | 0.257 | 0.910(0.328-2.53) | 0.857 | |
| rs6678618 | C/T | 0 | 3 | 67 | 1.000 | 0 | 2 | 28 | 1.000 | 0.635(0.103-3.901) | 0.621 | |
| rs6603883 | G/A | 0 | 18 | 52 | 0.588 | 0 | 8 | 22 | 1.000 | 0.959(0.392-2.344) | 0.927 | |
| rs3754334 | G/A | 1 | 17 | 52 | 1.000 | 1 | 7 | 22 | 0.505 | 0.890(0.377-2.098) | 0.790 | |
| rs6603856 | G/A | 2 | 12 | 56 | 0.519 | 1 | 5 | 24 | 0.325 | 0.855(0.327-2.238) | 0.749 | |
| rs6669624 | G/A | 4 | 12 | 54 | 1.000 | 1 | 3 | 26 | 0.165 | 1.100(0.370-3.275) | 0.864 | |
| rs11260742 | T/C | 2 | 11 | 57 | 0.162 | 1 | 5 | 24 | 0.325 | 0.910(0.350-2.356) | 0.844 | |
| rs13375644 | C/T | 3 | 18 | 49 | 0.048 | 3 | 5 | 22 | 0.121 | 1.150(0.343-3.86) | 0.821 | |
| rs10907223 | G/A | 1 | 12 | 57 | 0.514 | 1 | 5 | 24 | 0.325 | 0.841(0.321-2.202) | 0.725 | |
| rs699 | AGT | G/A | 7 | 28 | 35 | 0.776 | 2 | 16 | 12 | 0.423 | 0.857(0.449-1.637) | 0.640 |
| rs11122576 | T/C | 5 | 33 | 32 | 0.573 | 2 | 14 | 14 | 0.688 | 1.034(0.535-1.999) | 0.920 | |
| rs5046 | G/A | 0 | 13 | 57 | 1.000 | 0 | 7 | 23 | 1.000 | 0.775(0.293-2.051) | 0.607 | |
| rs3789679 | G/A | 4 | 28 | 38 | 1.000 | 3 | 10 | 17 | 0.644 | 1.027(0.501-2.106) | 0.942 | |
| rs1926722 | C/A | 5 | 30 | 35 | 0.777 | 2 | 14 | 14 | 0.688 | 0.933(0.481-1.811) | 0.838 | |
| rs4762 | G/A | 0 | 6 | 64 | 1.000 | 0 | 3 | 27 | 1.000 | 0.851(0.206-3.52) | 0.823 | |
| rs28730748 | G/A | 2 | 12 | 56 | 0.519 | 2 | 10 | 18 | 0.553 | 0.519(0.216-1.251) | 0.139 | |
| rs2071406 | A/G | 2 | 26 | 42 | 0.720 | 1 | 9 | 20 | 1.000 | 1.215(0.563-2.62) | 0.619 | |
| rs5050 | T/G | 1 | 7 | 62 | 0.240 | 0 | 6 | 24 | 1.000 | 0.618(0.210-1.822) | 0.380 | |
| rs11122575 | A/G | 4 | 16 | 40 | 0.397 | 4 | 6 | 20 | 1.000 | 1.528(0.576-4.051) | 0.392 | |
| rs3827749 | G/A | 1 | 31 | 38 | 0.093 | 2 | 10 | 18 | 0.632 | 1.013(0.496-2.07) | 0.971 | |
| rs5051 | T/C | 7 | 30 | 33 | 1.000 | 2 | 16 | 12 | 0.423 | 0.917(0.481-1.746) | 0.791 | |
| rs11568020 | C/T | 1 | 1 | 68 | 0.022 | 0 | 2 | 28 | 1.000 | 0.635(0.103-3.901) | 0.621 | |
| rs2478523 | A/G | 6 | 30 | 34 | 1.000 | 3 | 12 | 15 | 0.034 | 2.629(1.005-6.876) | ||
SNP: Single-nucleotide polymorphism; OR: odds ratio; 95% CI: 95% confidence interval; HWE: Hardy-Weinberg equilibrium;
Site with HWE p≤0.05 excluded; p<0.05 indicates statistical significance for allele model.
Location information of candidate SNPs in this study
| SNP_ID | Gene | Region | Position | MAF (Han) | MAF (Tibetan) | ||
|---|---|---|---|---|---|---|---|
| Case | Control | Case | Control | ||||
| rs2230597 | exonic | 16464673 | 0.207 | 0.155 | 0.157 | 0.150 | |
| rs6678616 | exonic | 16475123 | 0.029 | 0.086 | 0.021 | 0.033 | |
| rs2291804 | intronic | 16464936 | 0.021 | 0.138 | 0.014 | 0.000 | |
| rs35127370 | intronic | 16474840 | 0.093 | 0.121 | 0.100 | 0.100 | |
| rs2291805 | intronic | 16458814 | 0.093 | 0.259 | 0.086 | 0.100 | |
| rs3768294 | intronic | 16456176 | 0.100 | 0.276 | 0.099 | 0.107 | |
| rs6678618 | EPHA2 | exonic | 16475126 | 0.029 | 0.086 | 0.021 | 0.033 |
| rs6603883 | upstream | 16482976 | 0.136 | 0.138 | 0.129 | 0.133 | |
| rs3754334 | exonic | 16451767 | 0.143 | 0.293 | 0.136 | 0.150 | |
| rs6603856 | intronic | 16460840 | 0.093 | 0.241 | 0.101 | 0.117 | |
| rs6669624 | intronic | 16460339 | 0.086 | 0.207 | 0.091 | 0.083 | |
| rs11260742 | intronic | 16464260 | 0.107 | 0.259 | 0.107 | 0.117 | |
| rs13375644 | intronic | 16461833 | 0.086 | 0.241 | 0.091 | 0.080 | |
| rs10907223 | exonic | 16459745 | 0.093 | 0.224 | 0.100 | 0.117 | |
| rs699 | exonic | 230845794 | 0.179 | 0.328 | 0.300 | 0.333 | |
| rs11122576 | intronic | 230846679 | 0.350 | 0.241 | 0.307 | 0.300 | |
| rs5046 | upstream | 230850398 | 0.221 | 0.138 | 0.093 | 0.117 | |
| rs3789679 | intronic | 230849694 | 0.358 | 0.232 | 0.246 | 0.241 | |
| rs1926722 | intronic | 230840197 | 0.379 | 0.293 | 0.286 | 0.300 | |
| rs4762 | exonic | 230845977 | 0.050 | 0.172 | 0.043 | 0.050 | |
| rs28730748 | AGT | intronic | 230845571 | 0.059 | 0.121 | 0.101 | 0.179 |
| rs2071406 | upstream | 230850641 | 0.150 | 0.172 | 0.214 | 0.183 | |
| rs5050 | UTR5 | 230849886 | 0.107 | 0.172 | 0.064 | 0.100 | |
| rs11122575 | intronic | 230840269 | 0.211 | 0.173 | 0.186 | 0.130 | |
| rs3827749 | intronic | 230841559 | 0.243 | 0.345 | 0.236 | 0.233 | |
| rs5051 | UTR5 | 230849872 | 0.179 | 0.345 | 0.314 | 0.333 | |
| rs11568020 | UTR5 | 230850018 | 0.050 | 0.017 | 0.021 | 0.033 | |
| rs2478523 | intronic | 230841509 | 0.400 | 0.442 | 0.330 | 0.158 | |
MAF: minor allele frequency
Single loci associations with high altitude polycythemia risk in Han subjects
| SNP_ID | Model | Ref Allele | Alt Allele | OR | 95% CI | |
|---|---|---|---|---|---|---|
| rs2291805 | Dominant | 0.318 | 0.118-0.859 | |||
| Recessive | C | T | 0.245 | 0.095-0.629 | 0.999 | |
| Additive | 0.308 | 0.121-0.784 | ||||
| rs3754334 | Dominant | 0.385 | 0.151-0.982 | |||
| Recessive | G | A | 0.436 | 0.140-0.857 | 0.999 | |
| Additive | 0.361 | 0.148-0.878 | ||||
| rs13375644 | Dominant | 0.316 | 0.109-0.915 | |||
| Recessive | C | T | 0.452 | 0.102-0.779 | 0.999 | |
| Additive | 0.303 | 0.113-0.818 | ||||
| rs699 | Dominant | 0.360 | 0.142-0.917 | |||
| Recessive | G | A | 0.524 | 0.027-10.32 | 0.671 | |
| Additive | 0.403 | 0.171-0.952 | ||||
| rs3789679 | Dominant | 2.683 | 1.022-7.043 | |||
| Recessive | G | A | 1.869 | 0.329-10.6 | 0.480 | |
| Additive | 2.088 | 0.956-4.561 | 0.065 | |||
| rs4762 | Dominant | 0.248 | 0.074-0.826 | |||
| Recessive | G | A | 0.25 | 0.015-4.249 | 0.338 | |
| Additive | 0.331 | 0.122-0.898 | ||||
| rs5051 | Dominant | 0.36 | 0.141-0.916 | |||
| Recessive | T | C | 0.182 | 0.014-2.316 | 0.189 | |
| Additive | 0.377 | 0.165-0.862 |
OR: odds ratio; 95% CI: 95% confidence interval; p<0.05 indicates statistical significance for genetic model.
Single loci associations with high altitude polycythemia risk in Tibetan subjects
| SNP_ID | Model | Ref Allele | Alt Allele | OR | 95% CI | |
|---|---|---|---|---|---|---|
| rs2478523 | Dominant | 4.533 | 1.325-15.500 | |||
| Recessive | A | G | 1.095 | 0.200-5.988 | 0.917 | |
| Additive | 2.386 | 0.937-6.079 | 0.068 |
OR: odds ratio; 95% CI: 95% confidence interval; p<0.05 indicates statistical significance for genetic model.
Figure 1Haplotype block map for the fourteen EPHA2 SNPs genotype in this study
Figure 2Haplotype block map for the fourteen AGT SNPs genotype in this study