Literature DB >> 28879196

Assessment of Whole-Exome Sequence Data in Attempted Suicide within a Bipolar Disorder Cohort.

Eric T Monson1, Mehdi Pirooznia2, Jennifer Parla3, Melissa Kramer3, Fernando S Goes2, Marie E Gaine1, Sophia C Gaynor1, Kelly de Klerk1, Dubravka Jancic1, Rachel Karchin4, W Richard McCombie3, Peter P Zandi5, James B Potash1, Virginia L Willour1.   

Abstract

Suicidal behavior is a complex and devastating phenotype with a heritable component that has not been fully explained by existing common genetic variant analyses. This study represents the first large-scale DNA sequencing project designed to assess the role of rare functional genetic variation in suicidal behavior risk. To accomplish this, whole-exome sequencing data for ∼19,000 genes were generated for 387 bipolar disorder subjects with a history of suicide attempt and 631 bipolar disorder subjects with no prior suicide attempts. Rare functional variants were assessed in all exome genes as well as pathways hypothesized to contribute to suicidal behavior risk. No result survived conservative Bonferroni correction, though many suggestive findings have arisen that merit additional attention. In addition, nominal support for past associations in genes, such as BDNF, and pathways, such as the hypothalamic-pituitary-adrenal axis, was also observed. Finally, a novel pathway was identified that is driven by aldehyde dehydrogenase genes. Ultimately, this investigation explores variation left largely untouched by existing efforts in suicidal behavior, providing a wealth of novel information to add to future investigations, such as meta-analyses.

Entities:  

Keywords:  Bipolar disorder; Case/control; Exome; Pathway; Sequencing; Suicidal behavior; Suicide

Year:  2017        PMID: 28879196      PMCID: PMC5582499          DOI: 10.1159/000454773

Source DB:  PubMed          Journal:  Mol Neuropsychiatry        ISSN: 2296-9179


  60 in total

1.  Tissue expression patterns identify mouse cilia genes.

Authors:  Timothy S McClintock; Chad E Glasser; Soma C Bose; Daniel A Bergman
Journal:  Physiol Genomics       Date:  2007-10-30       Impact factor: 3.107

2.  Gene expression profiling of post-mortem orbitofrontal cortex in violent suicide victims.

Authors:  Andreas Thalmeier; Martin Dickmann; Ina Giegling; Barbara Schneider; Annette M Hartmann; Konrad Maurer; Axel Schnabel; Gerold Kauert; Hans-Jürgen Möller; Dan Rujescu
Journal:  Int J Neuropsychopharmacol       Date:  2007-07-03       Impact factor: 5.176

3.  Ethnicity-related polymorphisms and haplotypes in the human ABCB1 gene.

Authors:  Chava Kimchi-Sarfaty; Andrew H Marple; Shiri Shinar; Avraham M Kimchi; David Scavo; M Isabella Roma; In-Wha Kim; Adam Jones; Mili Arora; John Gribar; David Gurwitz; Michael M Gottesman
Journal:  Pharmacogenomics       Date:  2007-01       Impact factor: 2.533

4.  Familial pathways to early-onset suicidal behavior: familial and individual antecedents of suicidal behavior.

Authors:  Nadine M Melhem; David A Brent; Melissa Ziegler; Satish Iyengar; David Kolko; Maria Oquendo; Boris Birmaher; Ainsley Burke; Jamie Zelazny; Barbara Stanley; J John Mann
Journal:  Am J Psychiatry       Date:  2007-09       Impact factor: 18.112

5.  Candidate endophenotypes for genetic studies of suicidal behavior.

Authors:  J John Mann; Victoria A Arango; Shelli Avenevoli; David A Brent; Frances A Champagne; Paula Clayton; Dianne Currier; Donald M Dougherty; Fatemah Haghighi; Susan E Hodge; Joel Kleinman; Thomas Lehner; Francis McMahon; Eve K Mościcki; Maria A Oquendo; Ganshayam N Pandey; Jane Pearson; Barbara Stanley; Joseph Terwilliger; Amy Wenzel
Journal:  Biol Psychiatry       Date:  2009-02-07       Impact factor: 13.382

6.  Molecular characterization of four pharmacologically distinct gamma-aminobutyric acid transporters in mouse brain [corrected].

Authors:  Q R Liu; B López-Corcuera; S Mandiyan; H Nelson; N Nelson
Journal:  J Biol Chem       Date:  1993-01-25       Impact factor: 5.157

7.  Whole-gene sequencing investigation of SAT1 in attempted suicide.

Authors:  Eric T Monson; Kelly de Klerk; Sophia C Gaynor; Alex H Wagner; Marie E Breen; Meredith Parsons; Thomas L Casavant; Peter P Zandi; James B Potash; Virginia L Willour
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2016-05-27       Impact factor: 3.568

8.  Genomewide association scan of suicidal thoughts and behaviour in major depression.

Authors:  Alexandra Schosser; Amy W Butler; Marcus Ising; Nader Perroud; Rudolf Uher; Mandy Y Ng; Sarah Cohen-Woods; Nick Craddock; Michael J Owen; Ania Korszun; Lisa Jones; Ian Jones; Michael Gill; John P Rice; Wolfgang Maier; Ole Mors; Marcella Rietschel; Susanne Lucae; Elisabeth B Binder; Martin Preisig; Julia Perry; Federica Tozzi; Pierandrea Muglia; Katherine J Aitchison; Gerome Breen; Ian W Craig; Anne E Farmer; Bertram Müller-Myhsok; Peter McGuffin; Cathryn M Lewis
Journal:  PLoS One       Date:  2011-07-05       Impact factor: 3.240

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

Review 10.  Innovative approaches to bipolar disorder and its treatment.

Authors:  Paul J Harrison; Andrea Cipriani; Catherine J Harmer; Anna C Nobre; Kate Saunders; Guy M Goodwin; John R Geddes
Journal:  Ann N Y Acad Sci       Date:  2016-02       Impact factor: 5.691

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  5 in total

1.  Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

Authors:  Roxana Daneshjou; Yanran Wang; Yana Bromberg; Samuele Bovo; Pier L Martelli; Giulia Babbi; Pietro Di Lena; Rita Casadio; Matthew Edwards; David Gifford; David T Jones; Laksshman Sundaram; Rajendra Rana Bhat; Xiaolin Li; Lipika R Pal; Kunal Kundu; Yizhou Yin; John Moult; Yuxiang Jiang; Vikas Pejaver; Kymberleigh A Pagel; Biao Li; Sean D Mooney; Predrag Radivojac; Sohela Shah; Marco Carraro; Alessandra Gasparini; Emanuela Leonardi; Manuel Giollo; Carlo Ferrari; Silvio C E Tosatto; Eran Bachar; Johnathan R Azaria; Yanay Ofran; Ron Unger; Abhishek Niroula; Mauno Vihinen; Billy Chang; Maggie H Wang; Andre Franke; Britt-Sabina Petersen; Mehdi Pirooznia; Peter Zandi; Richard McCombie; James B Potash; Russ B Altman; Teri E Klein; Roger A Hoskins; Susanna Repo; Steven E Brenner; Alexander A Morgan
Journal:  Hum Mutat       Date:  2017-07-07       Impact factor: 4.878

2.  A targeted sequencing study of glutamatergic candidate genes in suicide attempters with bipolar disorder.

Authors:  Sophia C Gaynor; Marie E Breen; Eric T Monson; Kelly de Klerk; Meredith Parsons; Adam P DeLuca; Todd E Scheetz; Peter P Zandi; James B Potash; Virginia L Willour
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2016-08-02       Impact factor: 3.568

3.  Rare protein-coding variants implicate genes involved in risk of suicide death.

Authors:  Emily DiBlasi; Andrey A Shabalin; Eric T Monson; Brooks R Keeshin; Amanda V Bakian; Anne V Kirby; Elliott Ferris; Danli Chen; Nancy William; Eoin Gaj; Michael Klein; Leslie Jerominski; W Brandon Callor; Erik Christensen; Ken R Smith; Alison Fraser; Zhe Yu; Douglas Gray; Nicola J Camp; Eli A Stahl; Qingqin S Li; Anna R Docherty; Hilary Coon
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2021-05-27       Impact factor: 3.358

Review 4.  Genetic contributions to suicidal thoughts and behaviors.

Authors:  Emily DiBlasi; Jooeun Kang; Anna R Docherty
Journal:  Psychol Med       Date:  2021-05-25       Impact factor: 7.723

Review 5.  Genomic and neuroimaging approaches to bipolar disorder.

Authors:  Mojtaba Oraki Kohshour; Sergi Papiol; Christopher R K Ching; Thomas G Schulze
Journal:  BJPsych Open       Date:  2022-02-01
  5 in total

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