Literature DB >> 28870425

Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation.

S Branden Van Oss1, Christine E Cucinotta1, Karen M Arndt2.   

Abstract

The conserved, multifunctional Polymerase-Associated Factor 1 complex (Paf1C) regulates all stages of the RNA polymerase (Pol) II transcription cycle. In this review, we examine a diverse set of recent studies from various organisms that build on foundational studies in budding yeast. These studies identify new roles for Paf1C in the control of gene expression and the regulation of chromatin structure. In exploring these advances, we find that various functions of Paf1C, such as the regulation of promoter-proximal pausing and development in higher eukaryotes, are complex and context dependent. As more becomes known about the role of Paf1C in human disease, interest in the molecular mechanisms underpinning Paf1C function will continue to increase.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Paf1 complex; RNA polymerase II; histone modifications; transcription elongation

Mesh:

Substances:

Year:  2017        PMID: 28870425      PMCID: PMC5658044          DOI: 10.1016/j.tibs.2017.08.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  92 in total

1.  Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo.

Authors:  Dmitry K Pokholok; Nancy M Hannett; Richard A Young
Journal:  Mol Cell       Date:  2002-04       Impact factor: 17.970

2.  Genome-wide function of H2B ubiquitylation in promoter and genic regions.

Authors:  Kiran Batta; Zhenhai Zhang; Kuangyu Yen; David B Goffman; B Franklin Pugh
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

3.  Transcriptional regulation by Lge1p requires a function independent of its role in histone H2B ubiquitination.

Authors:  Xiaoting Zhang; Ania Kolaczkowska; Frédéric Devaux; Sneh Lata Panwar; Timothy C Hallstrom; Claude Jacq; W Scott Moye-Rowley
Journal:  J Biol Chem       Date:  2004-11-04       Impact factor: 5.157

Review 4.  Getting up to speed with transcription elongation by RNA polymerase II.

Authors:  Iris Jonkers; John T Lis
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

5.  The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors.

Authors:  Orit Rozenblatt-Rosen; Takashi Nagaike; Joshua M Francis; Syuzo Kaneko; Karen A Glatt; Christina M Hughes; Thomas LaFramboise; James L Manley; Matthew Meyerson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-09       Impact factor: 11.205

6.  Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex.

Authors:  Ying Liu; Linda Warfield; Chao Zhang; Jie Luo; Jasmina Allen; Walter H Lang; Jeffrey Ranish; Kevan M Shokat; Steven Hahn
Journal:  Mol Cell Biol       Date:  2009-07-06       Impact factor: 4.272

7.  Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate.

Authors:  Gilad Fuchs; Dror Hollander; Yoav Voichek; Gil Ast; Moshe Oren
Journal:  Genome Res       Date:  2014-07-21       Impact factor: 9.043

8.  Multiple P-TEFbs cooperatively regulate the release of promoter-proximally paused RNA polymerase II.

Authors:  Xiaodong Lu; Xinxing Zhu; You Li; Min Liu; Bin Yu; Yu Wang; Muhua Rao; Haiyang Yang; Kai Zhou; Yao Wang; Yanheng Chen; Meihua Chen; Songkuan Zhuang; Lin-Feng Chen; Runzhong Liu; Ruichuan Chen
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

9.  Regulation of transcriptional elongation in pluripotency and cell differentiation by the PHD-finger protein Phf5a.

Authors:  Alexandros Strikoudis; Charalampos Lazaris; Thomas Trimarchi; Antonio L Galvao Neto; Yan Yang; Panagiotis Ntziachristos; Scott Rothbart; Shannon Buckley; Igor Dolgalev; Matthias Stadtfeld; Brian D Strahl; Brian D Dynlacht; Aristotelis Tsirigos; Iannis Aifantis
Journal:  Nat Cell Biol       Date:  2016-10-17       Impact factor: 28.824

10.  Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate.

Authors:  Harry Fischl; Françoise S Howe; Andre Furger; Jane Mellor
Journal:  Mol Cell       Date:  2017-02-09       Impact factor: 17.970

View more
  51 in total

Review 1.  Epigenetics and the dynamics of chromatin during adenovirus infections.

Authors:  Kelsey L Lynch; Linda R Gooding; Charlie Garnett-Benson; David A Ornelles; Daphne C Avgousti
Journal:  FEBS Lett       Date:  2019-12-15       Impact factor: 4.124

2.  Nuclear RNA export factor variant initiates piRNA-guided co-transcriptional silencing.

Authors:  Kensaku Murano; Yuka W Iwasaki; Hirotsugu Ishizu; Akane Mashiko; Aoi Shibuya; Shu Kondo; Shungo Adachi; Saori Suzuki; Kuniaki Saito; Tohru Natsume; Mikiko C Siomi; Haruhiko Siomi
Journal:  EMBO J       Date:  2019-08-01       Impact factor: 11.598

3.  Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms.

Authors:  Jennifer J Chen; Jean Mbogning; Mark A Hancock; Dorsa Majdpour; Manan Madhok; Hassan Nassour; Juliana C Dallagnol; Viviane Pagé; David Chatenet; Jason C Tanny
Journal:  Mol Cell Biol       Date:  2020-07-14       Impact factor: 4.272

4.  PTEN modulates gene transcription by redistributing genome-wide RNA polymerase II occupancy.

Authors:  Ata Abbas; Roshan Padmanabhan; Todd Romigh; Charis Eng
Journal:  Hum Mol Genet       Date:  2019-09-01       Impact factor: 6.150

Review 5.  Causes and consequences of RNA polymerase II stalling during transcript elongation.

Authors:  Melvin Noe Gonzalez; Daniel Blears; Jesper Q Svejstrup
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-18       Impact factor: 94.444

6.  Drosophila melanogaster tPlus3a and tPlus3b ensure full male fertility by regulating transcription of Y-chromosomal, seminal fluid, and heat shock genes.

Authors:  Tim Hundertmark; Sabrina Kreutz; Nastasja Merle; Andrea Nist; Boris Lamp; Thorsten Stiewe; Alexander Brehm; Renate Renkawitz-Pohl; Christina Rathke
Journal:  PLoS One       Date:  2019-03-07       Impact factor: 3.240

7.  SETDB1 mediated histone H3 lysine 9 methylation suppresses MLL-fusion target expression and leukemic transformation.

Authors:  James Ropa; Nirmalya Saha; Hsiangyu Hu; Luke F Peterson; Moshe Talpaz; Andrew G Muntean
Journal:  Haematologica       Date:  2019-09-26       Impact factor: 9.941

8.  The Paf1 Complex Broadly Impacts the Transcriptome of Saccharomyces cerevisiae.

Authors:  Mitchell A Ellison; Alex R Lederer; Marcie H Warner; Travis N Mavrich; Elizabeth A Raupach; Lawrence E Heisler; Corey Nislow; Miler T Lee; Karen M Arndt
Journal:  Genetics       Date:  2019-05-15       Impact factor: 4.562

Review 9.  New Roles for Canonical Transcription Factors in Repeat Expansion Diseases.

Authors:  Lindsey D Goodman; Nancy M Bonini
Journal:  Trends Genet       Date:  2019-12-11       Impact factor: 11.639

10.  TOR complex 2 in fission yeast is required for chromatin-mediated gene silencing and assembly of heterochromatic domains at subtelomeres.

Authors:  Adiel Cohen; Aline Habib; Dana Laor; Sudhanshu Yadav; Martin Kupiec; Ronit Weisman
Journal:  J Biol Chem       Date:  2018-04-09       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.