Literature DB >> 28865010

Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production.

Chinae Thammarongtham1, Intawat Nookaew2,3,4, Tayvich Vorapreeda1, Tanawut Srisuk5, Miriam L Land4, Sukanya Jeennor6, Kobkul Laoteng7.   

Abstract

The selected robust fungus, Aspergillus oryzae strain BCC7051 is of interest for biotechnological production of lipid-derived products due to its capability to accumulate high amount of intracellular lipids using various sugars and agro-industrial substrates. Here, we report the genome sequence of the oleaginous A. oryzae BCC7051. The obtained reads were de novo assembled into 25 scaffolds spanning of 38,550,958 bps with predicted 11,456 protein-coding genes. By synteny mapping, a large rearrangement was found in two scaffolds of A. oryzae BCC7051 as compared to the reference RIB40 strain. The genetic relationship between BCC7051 and other strains of A. oryzae in terms of aflatoxin production was investigated, indicating that the A. oryzae BCC7051 was categorized into group 2 nonaflatoxin-producing strain. Moreover, a comparative analysis of the structural genes focusing on the involvement in lipid metabolism among oleaginous yeast and fungi revealed the presence of multiple isoforms of metabolic enzymes responsible for fatty acid synthesis in BCC7051. The alternative routes of acetyl-CoA generation as oleaginous features and malate/citrate/pyruvate shuttle were also identified in this A. oryzae strain. The genome sequence generated in this work is a dedicated resource for expanding genome-wide study of microbial lipids at systems level, and developing the fungal-based platform for production of diversified lipids with commercial relevance.

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Year:  2017        PMID: 28865010     DOI: 10.1007/s00284-017-1350-7

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  45 in total

1.  Sequence breakpoints in the aflatoxin biosynthesis gene cluster and flanking regions in nonaflatoxigenic Aspergillus flavus isolates.

Authors:  Perng-Kuang Chang; Bruce W Horn; Joe W Dorner
Journal:  Fungal Genet Biol       Date:  2005-09-09       Impact factor: 3.495

2.  Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

Authors:  Mario Stanke; Mark Diekhans; Robert Baertsch; David Haussler
Journal:  Bioinformatics       Date:  2008-01-24       Impact factor: 6.937

3.  Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes.

Authors:  Koichi Tamano; Kenneth S Bruno; Sue A Karagiosis; David E Culley; Shuang Deng; James R Collett; Myco Umemura; Hideaki Koike; Scott E Baker; Masayuki Machida
Journal:  Appl Microbiol Biotechnol       Date:  2012-06-26       Impact factor: 4.813

4.  Aspergillus has distinct fatty acid synthases for primary and secondary metabolism.

Authors:  D W Brown; T H Adams; N P Keller
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

5.  Aspergillus oryzae strains with a large deletion of the aflatoxin biosynthetic homologous gene cluster differentiated by chromosomal breakage.

Authors:  Yun-Hae Lee; Mihoko Tominaga; Risa Hayashi; Kazutoshi Sakamoto; Osamu Yamada; Osamu Akita
Journal:  Appl Microbiol Biotechnol       Date:  2006-05-04       Impact factor: 4.813

6.  Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae.

Authors:  Isabelle Colson; Daniela Delneri; Stephen G Oliver
Journal:  EMBO Rep       Date:  2004-04       Impact factor: 8.807

Review 7.  Regulation of lipid accumulation in oleaginous micro-organisms.

Authors:  C Ratledge
Journal:  Biochem Soc Trans       Date:  2002-11       Impact factor: 5.407

8.  SMART: recent updates, new developments and status in 2015.

Authors:  Ivica Letunic; Tobias Doerks; Peer Bork
Journal:  Nucleic Acids Res       Date:  2014-10-09       Impact factor: 16.971

Review 9.  Current understanding on aflatoxin biosynthesis and future perspective in reducing aflatoxin contamination.

Authors:  Jiujiang Yu
Journal:  Toxins (Basel)       Date:  2012-10-25       Impact factor: 4.546

10.  The Pfam protein families database: towards a more sustainable future.

Authors:  Robert D Finn; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Jaina Mistry; Alex L Mitchell; Simon C Potter; Marco Punta; Matloob Qureshi; Amaia Sangrador-Vegas; Gustavo A Salazar; John Tate; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

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  11 in total

1.  Mitochondrial Citrate Transport System in the Fungus Mucor circinelloides: Identification, Phylogenetic Analysis, and Expression Profiling During Growth and Lipid Accumulation.

Authors:  Junhuan Yang; Md Ahsanul Kabir Khan; Huaiyuan Zhang; Yao Zhang; Milan Certik; Victoriano Garre; Yuanda Song
Journal:  Curr Microbiol       Date:  2019-12-04       Impact factor: 2.188

2.  Promoter exchange of the cryptic nonribosomal peptide synthetase gene for oligopeptide production in Aspergillus oryzae.

Authors:  Chanikul Chutrakul; Sarocha Panchanawaporn; Sukanya Jeennor; Jutamas Anantayanon; Kobkul Laoteng
Journal:  J Microbiol       Date:  2021-11-09       Impact factor: 3.422

3.  Identification of Six Thiolases and Their Effects on Fatty Acid and Ergosterol Biosynthesis in Aspergillus oryzae.

Authors:  Hui Huang; Yali Niu; Qi Jin; Kunhai Qin; Li Wang; Yitong Shang; Bin Zeng; Zhihong Hu
Journal:  Appl Environ Microbiol       Date:  2022-02-09       Impact factor: 5.005

4.  Functional Characterization of Novel U6 RNA Polymerase III Promoters: Their Implication for CRISPR-Cas9-Mediated Gene Editing in Aspergillus oryzae.

Authors:  Chanikul Chutrakul; Sarocha Panchanawaporn; Sukanya Jeennor; Jutamas Anantayanon; Tayvich Vorapreeda; Vanicha Vichai; Kobkul Laoteng
Journal:  Curr Microbiol       Date:  2019-09-20       Impact factor: 2.188

5.  Novel pentose-regulated promoter of Aspergillus oryzae with application in controlling heterologous gene expression.

Authors:  Sukanya Jeennor; Jutamas Anantayanon; Chanikul Chutrakul; Sarocha Panchanawaporn; Kobkul Laoteng
Journal:  Biotechnol Rep (Amst)       Date:  2021-12-21

6.  The Exploring Functional Role of Ammonium Transporters of Aspergillus oryzae in Nitrogen Metabolism: Challenges towards Cell Biomass Production.

Authors:  Chanikul Chutrakul; Sarocha Panchanawaporn; Tayvich Vorapreeda; Sukanya Jeennor; Jutamas Anantayanon; Kobkul Laoteng
Journal:  Int J Mol Sci       Date:  2022-07-08       Impact factor: 6.208

7.  Controlling aflatoxin contamination and propagation of Aspergillus flavus by a soy-fermenting Aspergillus oryzae strain.

Authors:  Ahmad F Alshannaq; John G Gibbons; Mi-Kyung Lee; Kap-Hoon Han; Seung-Beom Hong; Jae-Hyuk Yu
Journal:  Sci Rep       Date:  2018-11-15       Impact factor: 4.379

8.  Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis.

Authors:  Naoki Watarai; Nozomi Yamamoto; Kazunori Sawada; Takuji Yamada
Journal:  DNA Res       Date:  2019-12-01       Impact factor: 4.458

9.  Comparison of Two Aspergillus oryzae Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism.

Authors:  Katherine Chacón-Vargas; Colin O McCarthy; Dasol Choi; Long Wang; Jae-Hyuk Yu; John G Gibbons
Journal:  Front Microbiol       Date:  2021-07-13       Impact factor: 5.640

10.  Aspergillus caespitosus ASEF14, an oleaginous fungus as a potential candidate for biodiesel production using sago processing wastewater (SWW).

Authors:  Naganandhini Srinivasan; Kiruthika Thangavelu; Ashika Sekar; B Sanjeev; Sivakumar Uthandi
Journal:  Microb Cell Fact       Date:  2021-09-09       Impact factor: 5.328

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