| Literature DB >> 28862696 |
Gerardo Della Sala1, Roberta Teta2, Germana Esposito3, Joseph R Pawlik4, Alfonso Mangoni5, Valeria Costantino6.
Abstract
Glycosylinositol phosphorylceramides (GIPCs) show a great structural diversity, but all share a small number of core structures, with a glucosamine, a mannose, or a glucuronic acid as the first sugar linked to the inositol. The Caribbean sponge Svenzea zeai was shown to consistently contain zeamide (1), the first example of a new class of GIPCs, in which the inositol is glycosylated by a d-arabinose. The structure of zeamide was determined by spectroscopic analysis (NMR, MS, ECD) and microscale chemical degradation. The 6-O-β-d-arabinopyranosyl-myo-inositol (d-Arap(1β→6)Ins) core motif of zeamide is unprecedented not only among GIPCs, but also in any natural glycoconjugate.Entities:
Keywords: ">d-arabinose; glycosylinositol phosphorylceramides (GIPCs); microscale chemical degradation
Mesh:
Substances:
Year: 2017 PMID: 28862696 PMCID: PMC6151786 DOI: 10.3390/molecules22091455
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Core structure of a typical glycosylphosphatidylinositol (GPI). The inositol may be glycosylated at O-2, at O-6, or at both positions. The lipid is generally a diacylglycerol, but in glycosylinositol phosphorylceramides (GIPCs) the lipid is a ceramide.
Figure 2Structure of a representative homologue of zeamide (1).
NMR data of zeamide (1) (1H 700 MHz, 13C 175 MHz, CD3OD) .
| Position | δC, Type | δH, mult (
| HMBC
| |
|---|---|---|---|---|
| 1 | 65.7, CH2 | a | 4.24, ddd (10.9, 7.2, 4.2) | |
| b | 3.96, ddd (10.9, 6.4, 2.7) | |||
| 2 | 55.5, CH | 3.91, ddd (9.0, 4.2, 2.7) | 1‴ | |
| 3 | 72.5, CH | 4.10, t (8.3) | 1, 2, 4, 5 | |
| 4 | 131.2, CH | 5.45, dd (15.3, 7.7) | 3, 6 | |
| 5 | 135.0, CH | 5.71, ddd (15.3, 6.9, 6.9) | 3, 6, 7 | |
| 6 | 33.5, CH2 | 2.02, m | 4, 5, 7 | |
| 7 | 30.5, CH2 | 1.37, m | ||
| 1′ | 76.5, CH | 4.01, ddd (9.9, 8.0, 2.7) | 6′ | |
| 2′ | 72.9, CH | 4.27, t (2.7) | 1′, 3′, 4′, 6′ | |
| 3′ | 72.9, CH | 3.36, dd (9.8, 2.7) | 4′ | |
| 4′ | 74.1, CH | 3.63, t (9.5) | 2′, 3′, 5′ | |
| 5′ | 77.3, CH | 3.41, t (9.3) | 4′, 6′ | |
| 6′ | 78.9, CH | 3.91, t (9.6) | 4′, 5′, 1″ | |
| 1′′ | 101.5, CH | 5.36, d (3.7) | 6′, 3″, 5″ | |
| 2″ | 71.1, CH | 3.76, dd (9.9, 3.7) | ||
| 3″ | 70.8, CH | 3.91, dd (9.9, 3.7) | ||
| 4″ | 71.1, CH | 3.88, br. s | 3″ | |
| 5″ | 64.9, CH | a | 4.36, br. d (12.7) | 1″, 3″ |
| b | 3.54, dd (12.7, 2.2) | 1″, 3″ | ||
| 1‴ | 175.9, C | |||
| 2‴ | 37.4, CH2 | 2.21, t (7.6) | 1‴, 3‴ | |
| 3‴ | 27.2, CH2 | 1.58 | 1‴, 2‴ |
NMR data of minor homologues with a saturated sphingosine. 1H signals: H-1a: 4.28, ddd (10.9, 7.9, 3.8); H-1b: 3.91, m; H-2: 3.84, ddd (9.0, 4.2, 2.7); H-3: 3.67, br. t (8.0); H-4a: 1.56, m; H-4b: 1.35, m. 13C signals: C-1: 65.9, CH2; C-2: 55.8, CH; C-3: 70.7, CH; C-4: 34.6, CH2; Additional 13C signals: 40.4, CH2, iso-chain ω-2; 32.2, CH2, n-chain ω-2; 29.3, CH, iso-chain ω-1; 23.8, CH2, n-chain ω-1; 23.2, CH3, iso-chain ω; 20.3, CH3, internal branch; 14.5, CH3, n-chain ω; ppm; Additional 1H signals: 1.53, nonet (6.6), iso-chain ω-1; 1.29, broad, alkyl chain protons; 1.18, m, iso-chain ω-2; 0.90, t (7.1), n-chain ω; 0.88, d (6.7), iso-chain ω; 0.86, d (6.8), internal branch methyl protons; HMBC correlations from proton stated to the indicated carbon.
Scheme 1Microscale degradation procedure used to determine structural details of zeamide (1).
Fatty acyl composition of zeamide (1).
| Fatty Acid Methyl Ester | |
|---|---|
| methyl 13-methyltetradecanoate (
| 22.6% |
| methyl 14-methylpentadecanoate (
| 21.0% |
| methyl hexadecanoate (
| 25.4% |
| methyl 10-methylhexadecanoate (10Me-C17) | 12.9% |
| methyl 15-methylhexadecanoate (
| 14.2% |
| methyl octadecanoate (
| 3.9% |
Sphingosine composition of zeamide (1).
| (2
| 3.5% |
| (2
| 2.7% |
| (2
| 62.1% |
| (2
| 3.4% |
| (2
| 4.5% |
| (2
| 5.2% |
| (2
| 1.8% |
| (2
| 1.1% |
| (2
| 1.3% |
| (2
| 11.4% |
| (2
| 1.8% |
| (2
| 1.2% |
Figure 3Core structures of known natural GIPCs. (A) The three core structures (Man(1α→2)myo-inositol-1-PO4-Cer, Man(1α→6)myo-inositol-1-PO4-Cer, and GlcN(1α→2)myo-inositol-1-PO4-Cer) of GIPCs found in fungi; (B) The core structure (ethanolamine-PO4-6-Man(1α→2)Man(1α→6)Man(1α→4)GlcN(1α→6)myo-inositol-1-PO4-Cer) of GPI-anchors based on a ceramide lipid moiety found in fungi and protozoa; (C) The core structure (GlcNAc(1α→4)GlcA(1α→2)myo-inositol-1-PO4-Cer) of GIPCs found in plants. Abbreviations: Ins: inositol; Glc: glucose; GlcN: 2-amino-2-deoxyglucose (glucosamine); GlcNAc: 2-acetamido-2-deoxyglucose (N-acetylglucosamine); GlcA: glucuronic acid; Man: mannose.