Literature DB >> 28856783

Because the Light is Better Here: Correlation-Time Analysis by NMR Spectroscopy.

Albert A Smith1, Matthias Ernst1, Beat H Meier1.   

Abstract

Relaxation data in NMR spectra are often used for dynamics analysis, by modeling motion in the sample with a correlation function consisting of one or more decaying exponential terms, each described by an order parameter, and a correlation time. This method has its origins in the Lipari-Szabo model-free approach, which originally considered overall tumbling plus one internal motion and was later expanded to several internal motions. Considering several of these cases in the solid state it is found that if the real motion is more complex than the assumed model, model fitting is biased towards correlation times where the relaxation data are most sensitive. This leads to unexpected distortions in the resulting dynamics description. Therefore dynamics detectors should be used, which characterize different ranges of correlation times and can help in the analysis of protein motion without assuming a specific model of the correlation function.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  NMR spectroscopy; correlation times; molecular dynamics; relaxation

Year:  2017        PMID: 28856783     DOI: 10.1002/anie.201707316

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  7 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

Review 2.  Relaxing with liquids and solids - A perspective on biomolecular dynamics.

Authors:  Paul Schanda
Journal:  J Magn Reson       Date:  2019-07-11       Impact factor: 2.229

3.  Refocusing CSA during magic angle spinning rotating-frame relaxation experiments.

Authors:  Eric G Keeler; Keith J Fritzsching; Ann E McDermott
Journal:  J Magn Reson       Date:  2018-09-14       Impact factor: 2.229

4.  Microsecond motions probed by near-rotary-resonance R15N MAS NMR experiments: the model case of protein overall-rocking in crystals.

Authors:  Alexey Krushelnitsky; Diego Gauto; Diana C Rodriguez Camargo; Paul Schanda; Kay Saalwächter
Journal:  J Biomol NMR       Date:  2018-05-30       Impact factor: 2.835

5.  Localized and Collective Motions in HET-s(218-289) Fibrils from Combined NMR Relaxation and MD Simulation.

Authors:  Albert A Smith; Matthias Ernst; Sereina Riniker; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2019-06-05       Impact factor: 15.336

6.  Water orientation and dynamics in the closed and open influenza B virus M2 proton channels.

Authors:  Martin D Gelenter; Venkata S Mandala; Michiel J M Niesen; Dina A Sharon; Aurelio J Dregni; Adam P Willard; Mei Hong
Journal:  Commun Biol       Date:  2021-03-12

7.  Experimental Characterization of the Hepatitis B Virus Capsid Dynamics by Solid-State NMR.

Authors:  Alexander A Malär; Morgane Callon; Albert A Smith; Shishan Wang; Lauriane Lecoq; Carolina Pérez-Segura; Jodi A Hadden-Perilla; Anja Böckmann; Beat H Meier
Journal:  Front Mol Biosci       Date:  2022-01-03
  7 in total

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