Literature DB >> 28855385

Finite cell-size effects on protein variability in Turing patterned tissues.

Javier Buceta1,2.   

Abstract

Herein we present a framework to characterize different sources of protein expression variability in Turing patterned tissues. In this context, we introduce the concept of granular noise to account for the unavoidable fluctuations due to finite cell-size effects and show that the nearest-neighbours autocorrelation function provides the means to measure it. To test our findings, we perform in silico experiments of growing tissues driven by a generic activator-inhibitor dynamics. Our results show that the relative importance of different sources of noise depends on the ratio between the characteristic size of cells and that of the pattern domains and on the ratio between the pattern amplitude and the effective intensity of the biochemical fluctuations. Importantly, our framework provides the tools to measure and distinguish different stochastic contributions during patterning: granularity versus biochemical noise. In addition, our analysis identifies the protein species that buffer the stochasticity the best and, consequently, it can help to determine key instructive signals in systems driven by a Turing instability. Altogether, we expect our study to be relevant in developmental processes leading to the formation of periodic patterns in tissues.
© 2017 The Author(s).

Keywords:  Turing; development; noise; patterning; tissue

Mesh:

Year:  2017        PMID: 28855385      PMCID: PMC5582127          DOI: 10.1098/rsif.2017.0316

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  39 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Spatial patterns induced purely by dichotomous disorder.

Authors:  J Buceta; Katja Lindenberg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-07-23

3.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

4.  Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism.

Authors:  Rushikesh Sheth; Luciano Marcon; M Félix Bastida; Marisa Junco; Laura Quintana; Randall Dahn; Marie Kmita; James Sharpe; Maria A Ros
Journal:  Science       Date:  2012-12-14       Impact factor: 47.728

Review 5.  Developmental pattern formation: insights from physics and biology.

Authors:  Anna Kicheva; Michael Cohen; James Briscoe
Journal:  Science       Date:  2012-10-12       Impact factor: 47.728

6.  Modeling digits. Digit patterning is controlled by a Bmp-Sox9-Wnt Turing network modulated by morphogen gradients.

Authors:  J Raspopovic; L Marcon; L Russo; J Sharpe
Journal:  Science       Date:  2014-08-01       Impact factor: 47.728

7.  Cell segregation in the vertebrate hindbrain relies on actomyosin cables located at the interhombomeric boundaries.

Authors:  Simone Calzolari; Javier Terriente; Cristina Pujades
Journal:  EMBO J       Date:  2014-02-25       Impact factor: 11.598

8.  Influence of cell geometry on division-plane positioning.

Authors:  Nicolas Minc; David Burgess; Fred Chang
Journal:  Cell       Date:  2011-02-04       Impact factor: 41.582

Review 9.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

10.  An actomyosin-based barrier inhibits cell mixing at compartmental boundaries in Drosophila embryos.

Authors:  Bruno Monier; Anne Pélissier-Monier; Andrea H Brand; Bénédicte Sanson
Journal:  Nat Cell Biol       Date:  2009-12-06       Impact factor: 28.824

View more
  1 in total

1.  Self-sustained planar intercalations due to mechanosignaling feedbacks lead to robust axis extension during morphogenesis.

Authors:  Samira Anbari; Javier Buceta
Journal:  Sci Rep       Date:  2020-07-03       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.