Literature DB >> 28847961

Clipping of arginine-methylated histone tails by JMJD5 and JMJD7.

Haolin Liu1,2,3, Chao Wang1,2, Schuyler Lee1,2, Yu Deng4, Matthew Wither5, Sangphil Oh6, Fangkun Ning1,2, Carissa Dege1,2, Qianqian Zhang7, Xinjian Liu4, Aaron M Johnson5, Jianye Zang8, Zhongzhou Chen7, Ralf Janknecht6, Kirk Hansen5, Philippa Marrack1,2,3,5, Chuan-Yuan Li4, John W Kappler9,2,3, James Hagman9,2,5, Gongyi Zhang9,2.   

Abstract

Two of the unsolved, important questions about epigenetics are: do histone arginine demethylases exist, and is the removal of histone tails by proteolysis a major epigenetic modification process? Here, we report that two orphan Jumonji C domain (JmjC)-containing proteins, JMJD5 and JMJD7, have divalent cation-dependent protease activities that preferentially cleave the tails of histones 2, 3, or 4 containing methylated arginines. After the initial specific cleavage, JMJD5 and JMJD7, acting as aminopeptidases, progressively digest the C-terminal products. JMJD5-deficient fibroblasts exhibit dramatically increased levels of methylated arginines and histones. Furthermore, depletion of JMJD7 in breast cancer cells greatly decreases cell proliferation. The protease activities of JMJD5 and JMJD7 represent a mechanism for removal of histone tails bearing methylated arginine residues and define a potential mechanism of transcription regulation.

Entities:  

Keywords:  JMJD5/7; arginine methylation; clipping; histone tail

Mesh:

Substances:

Year:  2017        PMID: 28847961      PMCID: PMC5604019          DOI: 10.1073/pnas.1706831114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

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Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

2.  Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1.

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3.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

Review 4.  Histones and nucleosomes in Archaea and Eukarya: a comparative analysis.

Authors:  S L Pereira; J N Reeve
Journal:  Extremophiles       Date:  1998-08       Impact factor: 2.395

Review 5.  Mechanism and function of oxidative reversal of DNA and RNA methylation.

Authors:  Li Shen; Chun-Xiao Song; Chuan He; Yi Zhang
Journal:  Annu Rev Biochem       Date:  2014       Impact factor: 23.643

6.  Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases.

Authors:  Johnathan R Whetstine; Amanda Nottke; Fei Lan; Maite Huarte; Sarit Smolikov; Zhongzhou Chen; Eric Spooner; En Li; Gongyi Zhang; Monica Colaiacovo; Yang Shi
Journal:  Cell       Date:  2006-04-06       Impact factor: 41.582

7.  Fe(II)/alpha-ketoglutarate hydroxylases involved in nucleobase, nucleoside, nucleotide, and chromatin metabolism.

Authors:  Jana M Simmons; Tina A Müller; Robert P Hausinger
Journal:  Dalton Trans       Date:  2008-06-27       Impact factor: 4.390

8.  Overexpression of histone demethylase JMJD5 promotes metastasis and indicates a poor prognosis in breast cancer.

Authors:  Zhihua Zhao; Chuntao Sun; Fengqi Li; Jiankui Han; Xanjun Li; Zhenguo Song
Journal:  Int J Clin Exp Pathol       Date:  2015-09-01

9.  Human PAD4 regulates histone arginine methylation levels via demethylimination.

Authors:  Yanming Wang; Joanna Wysocka; Joyce Sayegh; Young-Ho Lee; Julie R Perlin; Lauriebeth Leonelli; Lakshmi S Sonbuchner; Charles H McDonald; Richard G Cook; Yali Dou; Robert G Roeder; Steven Clarke; Michael R Stallcup; C David Allis; Scott A Coonrod
Journal:  Science       Date:  2004-09-02       Impact factor: 47.728

Review 10.  Histone proteolysis: a proposal for categorization into 'clipping' and 'degradation'.

Authors:  Maarten Dhaenens; Pieter Glibert; Paulien Meert; Liesbeth Vossaert; Dieter Deforce
Journal:  Bioessays       Date:  2014-10-28       Impact factor: 4.345

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  17 in total

Review 1.  The small members of the JMJD protein family: Enzymatic jewels or jinxes?

Authors:  Sangphil Oh; Sook Shin; Ralf Janknecht
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2019-04-26       Impact factor: 10.680

2.  Jumonji domain-containing protein family: the functions beyond lysine demethylation.

Authors:  Yuan Meng; Hongzhi Li; Changwei Liu; Li Zheng; Binghui Shen
Journal:  J Mol Cell Biol       Date:  2018-08-01       Impact factor: 6.216

3.  JMJD5 couples with CDK9 to release the paused RNA polymerase II.

Authors:  Haolin Liu; Srinivas Ramachandran; Nova Fong; Tzu Phang; Schuyler Lee; Pirooz Parsa; Xinjian Liu; Laura Harmacek; Thomas Danhorn; Tengyao Song; Sangphil Oh; Qianqian Zhang; Zhongzhou Chen; Qian Zhang; Ting-Hui Tu; Carrie Happoldt; Brian O'Conner; Ralf Janknecht; Chuan-Yuan Li; Philippa Marrack; John Kappler; Sonia Leach; Gongyi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

4.  Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge.

Authors:  Chengxin Zhang; Lydie Lane; Gilbert S Omenn; Yang Zhang
Journal:  J Proteome Res       Date:  2019-10-18       Impact factor: 4.466

5.  Histone Demethylase Jmjd7 Negatively Regulates Differentiation of Osteoclast.

Authors:  Yingci Liu; Atsushi Arai; Terresa Kim; Sol Kim; No-Hee Park; Reuben H Kim
Journal:  Chin J Dent Res       Date:  2018

6.  JMJD5 is a human arginyl C-3 hydroxylase.

Authors:  Sarah E Wilkins; Md Saiful Islam; Joan M Gannon; Suzana Markolovic; Richard J Hopkinson; Wei Ge; Christopher J Schofield; Rasheduzzaman Chowdhury
Journal:  Nat Commun       Date:  2018-03-21       Impact factor: 14.919

7.  JMJD5 links CRY1 function and proteasomal degradation.

Authors:  Anand R Saran; Diana Kalinowska; Sangphil Oh; Ralf Janknecht; Luciano DiTacchio
Journal:  PLoS Biol       Date:  2018-11-30       Impact factor: 8.029

8.  Clipped histone H3 is integrated into nucleosomes of DNA replication genes in the human malaria parasite Plasmodium falciparum.

Authors:  Abril Marcela Herrera-Solorio; Shruthi Sridhar Vembar; Cameron Ross MacPherson; Daniela Lozano-Amado; Gabriela Romero Meza; Beatriz Xoconostle-Cazares; Rafael Miyazawa Martins; Patty Chen; Miguel Vargas; Artur Scherf; Rosaura Hernández-Rivas
Journal:  EMBO Rep       Date:  2019-03-04       Impact factor: 8.807

9.  Specific Recognition of Arginine Methylated Histone Tails by JMJD5 and JMJD7.

Authors:  Haolin Liu; Chao Wang; Schuyler Lee; Fangkun Ning; Yang Wang; Qianqian Zhang; Zhongzhou Chen; Jianye Zang; Jay Nix; Shaodong Dai; Philippa Marrack; James Hagman; John Kappler; Gongyi Zhang
Journal:  Sci Rep       Date:  2018-02-19       Impact factor: 4.379

10.  KDM8/JMJD5 as a dual coactivator of AR and PKM2 integrates AR/EZH2 network and tumor metabolism in CRPC.

Authors:  Hung-Jung Wang; Mamata Pochampalli; Ling-Yu Wang; June X Zou; Pei-Shan Li; Sheng-Chieh Hsu; Bi-Juan Wang; Shih-Han Huang; Ping Yang; Joy C Yang; Cheng-Ying Chu; Chia-Ling Hsieh; Shian-Ying Sung; Chien-Feng Li; Clifford G Tepper; David K Ann; Allen C Gao; Christopher P Evans; Yoshihiro Izumiya; Chi-Pin Chuu; Wen-Ching Wang; Hong-Wu Chen; Hsing-Jien Kung
Journal:  Oncogene       Date:  2018-08-02       Impact factor: 9.867

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