Literature DB >> 28843507

Purification of metal-dependent lysine deacetylases with consistently high activity.

Tasha B Toro1, Richard G Painter2, Rashad A Haynes3, Elena Y Glotser4, Melyssa R Bratton5, Jenae R Bryant6, Kyara A Nichols7, Asia N Matthew-Onabanjo8, Ashley N Matthew9, Derek R Bratcher10, Chanel D Perry11, Terry J Watt12.   

Abstract

Metal-dependent lysine deacetylases (KDACs) are involved in regulation of numerous biological and disease processes through control of post-translational acetylation. Characterization of KDAC activity and substrate identification is complicated by inconsistent activity of prepared enzyme and a range of multi-step purifications. We describe a simplified protocol based on two-step affinity chromatography. The purification method is appropriate for use regardless of expression host, and we demonstrate purification of several representative members of the KDAC family as well as a selection of mutated variants. The purified proteins are highly active and consistent across preparations.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Histone deacetylase; Lysine deacetylase; hdac

Mesh:

Substances:

Year:  2017        PMID: 28843507      PMCID: PMC5624855          DOI: 10.1016/j.pep.2017.08.009

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  32 in total

Review 1.  Histone deacetylases as targets for treatment of multiple diseases.

Authors:  Jinhua Tang; Haidong Yan; Shougang Zhuang
Journal:  Clin Sci (Lond)       Date:  2013-06       Impact factor: 6.124

2.  Catalytic activity and inhibition of human histone deacetylase 8 is dependent on the identity of the active site metal ion.

Authors:  Stephanie L Gantt; Samuel G Gattis; Carol A Fierke
Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

3.  Acetylation site specificities of lysine deacetylase inhibitors in human cells.

Authors:  Christian Schölz; Brian T Weinert; Sebastian A Wagner; Petra Beli; Yasuyuki Miyake; Jun Qi; Lars J Jensen; Werner Streicher; Anna R McCarthy; Nicholas J Westwood; Sonia Lain; Jürgen Cox; Patrick Matthias; Matthias Mann; James E Bradner; Chunaram Choudhary
Journal:  Nat Biotechnol       Date:  2015-03-09       Impact factor: 54.908

4.  A new family of human histone deacetylases related to Saccharomyces cerevisiae HDA1p.

Authors:  W Fischle; S Emiliani; M J Hendzel; T Nagase; N Nomura; W Voelter; E Verdin
Journal:  J Biol Chem       Date:  1999-04-23       Impact factor: 5.157

5.  Histone deacetylase activators: N-acetylthioureas serve as highly potent and isozyme selective activators for human histone deacetylase-8 on a fluorescent substrate.

Authors:  Raushan K Singh; Tanmay Mandal; Narayanaganesh Balsubramanian; Tajae Viaene; Travis Leedahl; Nitesh Sule; Gregory Cook; D K Srivastava
Journal:  Bioorg Med Chem Lett       Date:  2011-08-04       Impact factor: 2.823

6.  Generation of Recombinant Baculovirus DNA in E.coli Using a Baculovirus Shuttle Vector.

Authors:  V C Ciccarone; D A Polayes; V A Luckow
Journal:  Methods Mol Med       Date:  1998

7.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

8.  Peptide arrays identify isoform-selective substrates for profiling endogenous lysine deacetylase activity.

Authors:  Zachary A Gurard-Levin; Kristopher A Kilian; Joohoon Kim; Katinka Bähr; Milan Mrksich
Journal:  ACS Chem Biol       Date:  2010-09-17       Impact factor: 5.100

9.  HDAC8 Catalyzes the Hydrolysis of Long Chain Fatty Acyl Lysine.

Authors:  Pornpun Aramsangtienchai; Nicole A Spiegelman; Bin He; Seth P Miller; Lunzhi Dai; Yingming Zhao; Hening Lin
Journal:  ACS Chem Biol       Date:  2016-08-05       Impact factor: 5.100

10.  Combining mass spectrometry and peptide arrays to profile the specificities of histone deacetylases.

Authors:  Zachary A Gurard-Levin; Joohoon Kim; Milan Mrksich
Journal:  Chembiochem       Date:  2009-09-04       Impact factor: 3.164

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  2 in total

1.  Chelatable trace zinc causes low, irreproducible KDAC8 activity.

Authors:  Tasha B Toro; Samantha A Edenfield; Brandon J Hylton; Terry J Watt
Journal:  Anal Biochem       Date:  2017-10-31       Impact factor: 3.365

2.  Lysine Deacetylase Substrate Selectivity: A Dynamic Ionic Interaction Specific to KDAC8.

Authors:  Tasha B Toro; Jordan S Swanier; Jada A Bezue; Christian G Broussard; Terry J Watt
Journal:  Biochemistry       Date:  2021-08-06       Impact factor: 3.321

  2 in total

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