Literature DB >> 28828601

How likely are oscillations in a genetic feedback loop with delay?

Filippo Cola1, Filippo Marchetti2, Guido Tiana3.   

Abstract

Some genetic control networks display temporal oscillations as a result of delays in their homeostatic control. A relevant question about these systems is whether the oscillating regime is a rare feature, or it corresponds to a sizeable volume of the space of parameters. The answer is not trivial mainly due to the large number of parameters controlling the rate equations which describe the network. We have developed an efficient sampling scheme of the parameter space, based on a Monte Carlo algorithm, and applied it to a two-node system with delay, characterised by a 8-dimension parameter space. The result is that the volume fraction of the parameter space associated with oscillations is small but not negligible, and it is weakly dependent on the duration of the delay. The most critical parameter to control oscillations is the coupling production rates, which must have opposite sign, giving rise to a negative feedback loop. The oscillating regions are connected except along the equilibrium constants between the two species, not allowing neutral evolution along this parameter.

Keywords:  Living systems: Cellular Processes

Mesh:

Year:  2017        PMID: 28828601     DOI: 10.1140/epje/i2017-11563-y

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  21 in total

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Review 6.  Oscillations and temporal signalling in cells.

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8.  Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop.

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Journal:  Sci Rep       Date:  2015-06-12       Impact factor: 4.379

10.  Ultradian oscillation in expression of four melatonin receptor subtype genes in the pineal gland of the grass puffer, a semilunar-synchronized spawner, under constant darkness.

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Journal:  Front Neurosci       Date:  2015-01-30       Impact factor: 4.677

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