Literature DB >> 28825728

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis.

Jun Xiao1, Run Jin1, Xiang Yu1, Max Shen1, John D Wagner1, Armaan Pai1, Claire Song1, Michael Zhuang1, Samantha Klasfeld1, Chongsheng He2, Alexandre M Santos3, Chris Helliwell4, Jose L Pruneda-Paz5, Steve A Kay6, Xiaowei Lin7, Sujuan Cui7, Meilin Fernandez Garcia8, Oliver Clarenz9, Justin Goodrich9, Xiaoyu Zhang3, Ryan S Austin10,11, Roberto Bonasio2, Doris Wagner1.   

Abstract

Disruption of gene silencing by Polycomb protein complexes leads to homeotic transformations and altered developmental-phase identity in plants. Here we define short genomic fragments, known as Polycomb response elements (PREs), that direct Polycomb repressive complex 2 (PRC2) placement at developmental genes regulated by silencing in Arabidopsis thaliana. We identify transcription factor families that bind to these PREs, colocalize with PRC2 on chromatin, physically interact with and recruit PRC2, and are required for PRC2-mediated gene silencing in vivo. Two of the cis sequence motifs enriched in the PREs are cognate binding sites for the identified transcription factors and are necessary and sufficient for PRE activity. Thus PRC2 recruitment in Arabidopsis relies in large part on binding of trans-acting factors to cis-localized DNA sequence motifs.

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Year:  2017        PMID: 28825728     DOI: 10.1038/ng.3937

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  72 in total

Review 1.  The age of multiplexity: recruitment and interactions of Polycomb complexes in plants.

Authors:  Alexander Förderer; Yue Zhou; Franziska Turck
Journal:  Curr Opin Plant Biol       Date:  2016-01-28       Impact factor: 7.834

2.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

3.  Gibberellin acts positively then negatively to control onset of flower formation in Arabidopsis.

Authors:  Nobutoshi Yamaguchi; Cara M Winter; Miin-Feng Wu; Yuri Kanno; Ayako Yamaguchi; Mitsunori Seo; Doris Wagner
Journal:  Science       Date:  2014-05-09       Impact factor: 47.728

4.  New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana.

Authors:  Ryan S Austin; Shu Hiu; Jamie Waese; Matthew Ierullo; Asher Pasha; Ting Ting Wang; Jim Fan; Curtis Foong; Robert Breit; Darrell Desveaux; Alan Moses; Nicholas J Provart
Journal:  Plant J       Date:  2016-10-05       Impact factor: 6.417

5.  agriGO: a GO analysis toolkit for the agricultural community.

Authors:  Zhou Du; Xin Zhou; Yi Ling; Zhenhai Zhang; Zhen Su
Journal:  Nucleic Acids Res       Date:  2010-04-30       Impact factor: 16.971

6.  Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis.

Authors:  Sang Yeol Kim; T Zhu; Z Renee Sung
Journal:  Plant Physiol       Date:  2009-09-25       Impact factor: 8.340

7.  The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.

Authors:  Ayako Yamaguchi; Miin-Feng Wu; Li Yang; Gang Wu; R Scott Poethig; Doris Wagner
Journal:  Dev Cell       Date:  2009-08       Impact factor: 12.270

8.  Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.

Authors:  Tsuyoshi Nakagawa; Takayuki Kurose; Takeshi Hino; Katsunori Tanaka; Makoto Kawamukai; Yasuo Niwa; Kiminori Toyooka; Ken Matsuoka; Tetsuro Jinbo; Tetsuya Kimura
Journal:  J Biosci Bioeng       Date:  2007-07       Impact factor: 2.894

9.  Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time.

Authors:  Bailong Zhang; Liang Wang; Liping Zeng; Chao Zhang; Hong Ma
Journal:  Genes Dev       Date:  2015-05-01       Impact factor: 11.361

10.  Antagonistic roles of SEPALLATA3, FT and FLC genes as targets of the polycomb group gene CURLY LEAF.

Authors:  Manuel Lopez-Vernaza; Suxin Yang; Ralf Müller; Frazer Thorpe; Erica de Leau; Justin Goodrich
Journal:  PLoS One       Date:  2012-02-17       Impact factor: 3.240

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  73 in total

1.  PcG Proteins MSI1 and BMI1 Function Upstream of miR156 to Regulate Aerial Tuber Formation in Potato.

Authors:  Amit Kumar; Kirtikumar Ramesh Kondhare; Pallavi Vijay Vetal; Anjan Kumar Banerjee
Journal:  Plant Physiol       Date:  2019-08-19       Impact factor: 8.340

2.  Low-input chromatin profiling in Arabidopsis endosperm using CUT&RUN.

Authors:  Xiao-Yu Zheng; Mary Gehring
Journal:  Plant Reprod       Date:  2019-02-05       Impact factor: 3.767

Review 3.  Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development.

Authors:  L Lepiniec; M Devic; T J Roscoe; D Bouyer; D-X Zhou; C Boulard; S Baud; B Dubreucq
Journal:  Plant Reprod       Date:  2018-05-24       Impact factor: 3.767

4.  A Novel Class of Histone Readers.

Authors:  Kathleen L Farquharson
Journal:  Plant Cell       Date:  2018-01-25       Impact factor: 11.277

5.  HISTONE DEACETYLASE 9 Functions with Polycomb Silencing to Repress FLOWERING LOCUS C Expression.

Authors:  Xiaolin Zeng; Zheng Gao; Chuan Jiang; Yupeng Yang; Renyi Liu; Yuehui He
Journal:  Plant Physiol       Date:  2019-10-22       Impact factor: 8.340

6.  Combinatorial interactions of the LEC1 transcription factor specify diverse developmental programs during soybean seed development.

Authors:  Leonardo Jo; Julie M Pelletier; Ssu-Wei Hsu; Russell Baden; Robert B Goldberg; John J Harada
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-31       Impact factor: 11.205

7.  The B3-Domain Transcription Factor VAL1 Regulates the Floral Transition by Repressing FLOWERING LOCUS T.

Authors:  Yanjun Jing; Qiang Guo; Rongcheng Lin
Journal:  Plant Physiol       Date:  2019-07-09       Impact factor: 8.340

8.  The Arabidopsis Nodulin Homeobox Factor AtNDX Interacts with AtRING1A/B and Negatively Regulates Abscisic Acid Signaling.

Authors:  Yujuan Zhu; Xiaoying Hu; Ying Duan; Shaofang Li; Yu Wang; Amin Ur Rehman; Junna He; Jing Zhang; Deping Hua; Li Yang; Li Wang; Zhizhong Chen; Chuanyou Li; Baoshan Wang; Chun-Peng Song; Qianwen Sun; Shuhua Yang; Zhizhong Gong
Journal:  Plant Cell       Date:  2020-01-09       Impact factor: 11.277

9.  RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2.

Authors:  Célia Alecki; Victoria Chiwara; Lionel A Sanz; Daniel Grau; Osvaldo Arias Pérez; Elodie L Boulier; Karim-Jean Armache; Frédéric Chédin; Nicole J Francis
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

10.  The Chromatin-Remodeling Factor PICKLE Antagonizes Polycomb Repression of FT to Promote Flowering.

Authors:  Yanjun Jing; Qiang Guo; Rongcheng Lin
Journal:  Plant Physiol       Date:  2019-08-03       Impact factor: 8.340

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