Literature DB >> 28823596

High-dimension single-cell analysis applied to cancer.

Lili Wang1, Kenneth J Livak2, Catherine J Wu3.   

Abstract

High-dimension single-cell technology is transforming our ability to study and understand cancer. Numerous studies and reviews have reported advances in technology development. The biological insights gleaned from single-cell technology about cancer biology are less reviewed. Here we focus on research studies that illustrate novel aspects of cancer biology that bulk analysis could not achieve, and discuss the fresh insights gained from the application of single-cell technology across basic and clinical cancer studies.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cell identity; Correlation analysis; Single-cell analysis; Subclone phylogeny; Tumor ecosystem; Tumor heterogeneity

Mesh：

Year:  2017        PMID： 28823596      PMCID： PMC5780229          DOI： 10.1016/j.mam.2017.08.005

Source DB:  PubMed          Journal:  Mol Aspects Med        ISSN： 0098-2997


  132 in total

1.  Counting absolute numbers of molecules using unique molecular identifiers.

Authors:  Teemu Kivioja; Anna Vähärautio; Kasper Karlsson; Martin Bonke; Martin Enge; Sten Linnarsson; Jussi Taipale
Journal:  Nat Methods       Date:  2011-11-20       Impact factor: 28.547

Review 2.  Computational and analytical challenges in single-cell transcriptomics.

Authors:  Oliver Stegle; Sarah A Teichmann; John C Marioni
Journal:  Nat Rev Genet       Date:  2015-01-28       Impact factor: 53.242

3.  Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia.

Authors:  Alice Giustacchini; Supat Thongjuea; Nikolaos Barkas; Petter S Woll; Benjamin J Povinelli; Christopher A G Booth; Paul Sopp; Ruggiero Norfo; Alba Rodriguez-Meira; Neil Ashley; Lauren Jamieson; Paresh Vyas; Kristina Anderson; Åsa Segerstolpe; Hong Qian; Ulla Olsson-Strömberg; Satu Mustjoki; Rickard Sandberg; Sten Eirik W Jacobsen; Adam J Mead
Journal:  Nat Med       Date:  2017-05-15       Impact factor: 53.440

4.  Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.

Authors:  Chunhong Zheng; Liangtao Zheng; Jae-Kwang Yoo; Huahu Guo; Yuanyuan Zhang; Xinyi Guo; Boxi Kang; Ruozhen Hu; Julie Y Huang; Qiming Zhang; Zhouzerui Liu; Minghui Dong; Xueda Hu; Wenjun Ouyang; Jirun Peng; Zemin Zhang
Journal:  Cell       Date:  2017-06-15       Impact factor: 41.582

5.  Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq.

Authors:  Karen M Mann; Justin Y Newberg; Michael A Black; Devin J Jones; Felipe Amaya-Manzanares; Liliana Guzman-Rojas; Takahiro Kodama; Jerrold M Ward; Alistair G Rust; Louise van der Weyden; Christopher Chin Kuan Yew; Jill L Waters; Marco L Leung; Keith Rogers; Susan M Rogers; Leslie A McNoe; Luxmanan Selvanesan; Nicholas Navin; Nancy A Jenkins; Neal G Copeland; Michael B Mann
Journal:  Nat Biotechnol       Date:  2016-08-01       Impact factor: 54.908

6.  Detection and characterization of carcinoma cells in the blood.

Authors:  E Racila; D Euhus; A J Weiss; C Rao; J McConnell; L W Terstappen; J W Uhr
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

7.  EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing.

Authors:  Joshua M Francis; Cheng-Zhong Zhang; Cecile L Maire; Joonil Jung; Veronica E Manzo; Viktor A Adalsteinsson; Heather Homer; Sam Haidar; Brendan Blumenstiel; Chandra Sekhar Pedamallu; Azra H Ligon; J Christopher Love; Matthew Meyerson; Keith L Ligon
Journal:  Cancer Discov       Date:  2014-06-03       Impact factor: 39.397

Review 8.  Tumor Heterogeneity, Single-Cell Sequencing, and Drug Resistance.

Authors:  Felix Schmidt; Thomas Efferth
Journal:  Pharmaceuticals (Basel)       Date:  2016-06-16

9.  RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance.

Authors:  David T Miyamoto; Yu Zheng; Ben S Wittner; Richard J Lee; Huili Zhu; Katherine T Broderick; Rushil Desai; Douglas B Fox; Brian W Brannigan; Julie Trautwein; Kshitij S Arora; Niyati Desai; Douglas M Dahl; Lecia V Sequist; Matthew R Smith; Ravi Kapur; Chin-Lee Wu; Toshi Shioda; Sridhar Ramaswamy; David T Ting; Mehmet Toner; Shyamala Maheswaran; Daniel A Haber
Journal:  Science       Date:  2015-09-18       Impact factor: 47.728

10.  Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing.

Authors:  Ellen Heitzer; Martina Auer; Christin Gasch; Martin Pichler; Peter Ulz; Eva Maria Hoffmann; Sigurd Lax; Julie Waldispuehl-Geigl; Oliver Mauermann; Carolin Lackner; Gerald Höfler; Florian Eisner; Heinz Sill; Hellmut Samonigg; Klaus Pantel; Sabine Riethdorf; Thomas Bauernhofer; Jochen B Geigl; Michael R Speicher
Journal:  Cancer Res       Date:  2013-03-07       Impact factor: 12.701
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  5 in total

Review 1.  Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy.

Authors:  Satyen H Gohil; J Bryan Iorgulescu; David A Braun; Derin B Keskin; Kenneth J Livak
Journal:  Nat Rev Clin Oncol       Date:  2020-12-04       Impact factor: 66.675

Review 2.  Dissecting CLL through high-dimensional single-cell technologies.

Authors:  Satyen H Gohil; Catherine J Wu
Journal:  Blood       Date:  2019-02-06       Impact factor: 25.476

3.  Leveraging Single-Cell RNA Sequencing Experiments to Model Intratumor Heterogeneity.

Authors:  Meghan C Ferrall-Fairbanks; Markus Ball; Eric Padron; Philipp M Altrock
Journal:  JCO Clin Cancer Inform       Date:  2019-04

Review 4.  Lymphoma Heterogeneity Unraveled by Single-Cell Transcriptomics.

Authors:  Loic Ysebaert; Anne Quillet-Mary; Marie Tosolini; Frederic Pont; Camille Laurent; Jean-Jacques Fournié
Journal:  Front Immunol       Date:  2021-02-26       Impact factor: 7.561

5.  A single-cell survey of cellular hierarchy in acute myeloid leukemia.

Authors:  Junqing Wu; Yanyu Xiao; Jie Sun; Huiyu Sun; Haide Chen; Yuanyuan Zhu; Huarui Fu; Chengxuan Yu; Weigao E; Shujing Lai; Lifeng Ma; Jiaqi Li; Lijiang Fei; Mengmeng Jiang; Jingjing Wang; Fang Ye; Renying Wang; Ziming Zhou; Guodong Zhang; Tingyue Zhang; Qiong Ding; Zou Wang; Sheng Hao; Lizhen Liu; Weiyan Zheng; Jingsong He; Weijia Huang; Yungui Wang; Jin Xie; Tiefeng Li; Tao Cheng; Xiaoping Han; He Huang; Guoji Guo
Journal:  J Hematol Oncol       Date:  2020-09-25       Impact factor: 17.388
  5 in total

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