Literature DB >> 28821322

SAXS versus FRET: A Matter of Heterogeneity?

Kiersten M Ruff1, Alex S Holehouse2.   

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Year:  2017        PMID： 28821322      PMCID： PMC5658740          DOI： 10.1016/j.bpj.2017.07.024

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  11 in total

1.  Random-coil behavior and the dimensions of chemically unfolded proteins.

Authors:  Jonathan E Kohn; Ian S Millett; Jaby Jacob; Bojan Zagrovic; Thomas M Dillon; Nikolina Cingel; Robin S Dothager; Soenke Seifert; P Thiyagarajan; Tobin R Sosnick; M Zahid Hasan; Vijay S Pande; Ingo Ruczinski; Sebastian Doniach; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

2.  Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state.

Authors:  Tae Yeon Yoo; Steve P Meisburger; James Hinshaw; Lois Pollack; Gilad Haran; Tobin R Sosnick; Kevin Plaxco
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

3.  Folding of Protein L with Implications for Collapse in the Denatured State Ensemble.

Authors:  Hiranmay Maity; Govardhan Reddy
Journal:  J Am Chem Soc       Date:  2016-02-16       Impact factor: 15.419

4.  Coil-globule transition in the denatured state of a small protein.

Authors:  Eilon Sherman; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-20       Impact factor: 11.205

5.  Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations.

Authors:  Kusai A Merchant; Robert B Best; John M Louis; Irina V Gopich; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

6.  Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.

Authors:  Gustavo Fuertes; Niccolò Banterle; Kiersten M Ruff; Aritra Chowdhury; Davide Mercadante; Christine Koehler; Michael Kachala; Gemma Estrada Girona; Sigrid Milles; Ankur Mishra; Patrick R Onck; Frauke Gräter; Santiago Esteban-Martín; Rohit V Pappu; Dmitri I Svergun; Edward A Lemke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

7.  Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.

Authors:  Mikayel Aznauryan; Leonildo Delgado; Andrea Soranno; Daniel Nettels; Jie-Rong Huang; Alexander M Labhardt; Stephan Grzesiek; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-26       Impact factor: 11.205

8.  Probing the Action of Chemical Denaturant on an Intrinsically Disordered Protein by Simulation and Experiment.

Authors:  Wenwei Zheng; Alessandro Borgia; Karin Buholzer; Alexander Grishaev; Benjamin Schuler; Robert B Best
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

9.  Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods.

Authors:  Alessandro Borgia; Wenwei Zheng; Karin Buholzer; Madeleine B Borgia; Anja Schüler; Hagen Hofmann; Andrea Soranno; Daniel Nettels; Klaus Gast; Alexander Grishaev; Robert B Best; Benjamin Schuler
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

10.  Conformational Heterogeneity and FRET Data Interpretation for Dimensions of Unfolded Proteins.

Authors:  Jianhui Song; Gregory-Neal Gomes; Tongfei Shi; Claudiu C Gradinaru; Hue Sun Chan
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033
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  5 in total

1.  The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures.

Authors:  Natalie E Stenzoski; Bowu Luan; Alex S Holehouse; Daniel P Raleigh
Journal:  Biophys J       Date:  2018-07-23       Impact factor: 4.033

2.  Inferring properties of disordered chains from FRET transfer efficiencies.

Authors:  Wenwei Zheng; Gül H Zerze; Alessandro Borgia; Jeetain Mittal; Benjamin Schuler; Robert B Best
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

3.  An Introduction to the Stickers-and-Spacers Framework as Applied to Biomolecular Condensates.

Authors:  Garrett M Ginell; Alex S Holehouse
Journal:  Methods Mol Biol       Date:  2023

4.  Unfolded states under folding conditions accommodate sequence-specific conformational preferences with random coil-like dimensions.

Authors:  Ivan Peran; Alex S Holehouse; Isaac S Carrico; Rohit V Pappu; Osman Bilsel; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-05       Impact factor: 11.205

5.  Integrating single-molecule spectroscopy and simulations for the study of intrinsically disordered proteins.

Authors:  Jhullian J Alston; Andrea Soranno; Alex S Holehouse
Journal:  Methods       Date:  2021-04-06       Impact factor: 3.608
  5 in total

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