Literature DB >> 28815469

Metagenome Analysis: a Powerful Tool for Enzyme Bioprospecting.

Aravind Madhavan1,2, Raveendran Sindhu1, Binod Parameswaran1, Rajeev K Sukumaran1, Ashok Pandey3.   

Abstract

Microorganisms are found throughout every corner of nature, and vast number of microorganisms is difficult to cultivate by classical microbiological techniques. The advent of metagenomics has revolutionized the field of microbial biotechnology. Metagenomics allow the recovery of genetic material directly from environmental niches without any cultivation techniques. Currently, metagenomic tools are widely employed as powerful tools to isolate and identify enzymes with novel biocatalytic activities from the uncultivable component of microbial communities. The employment of next-generation sequencing techniques for metagenomics resulted in the generation of large sequence data sets derived from various environments, such as soil, the human body and ocean water. This review article describes the state-of-the-art techniques and tools in metagenomics and discusses the potential of metagenomic approaches for the bioprospecting of industrial enzymes from various environmental samples. We also describe the unusual novel enzymes discovered via metagenomic approaches and discuss the future prospects for metagenome technologies.

Entities:  

Keywords:  Bioprospecting; Enzyme; Metagenomics; Metatranscriptomics

Mesh:

Substances:

Year:  2017        PMID: 28815469     DOI: 10.1007/s12010-017-2568-3

Source DB:  PubMed          Journal:  Appl Biochem Biotechnol        ISSN: 0273-2289            Impact factor:   2.926


  24 in total

Review 1.  Bioprospecting of microbial enzymes: current trends in industry and healthcare.

Authors:  Eswar Rao Tatta; Madangchanok Imchen; Jamseel Moopantakath; Ranjith Kumavath
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-07       Impact factor: 4.813

2.  Metagenomic views on taxonomic and functional profiles of the Himalayan Tsomgo cold lake and unveiling its deterzome potential.

Authors:  Ashutosh Kumar Singh; Megha Kumari; Nitish Sharma; Amit Kumar Rai; Sudhir P Singh
Journal:  Curr Genet       Date:  2022-08-05       Impact factor: 2.695

Review 3.  Industrial applications of cold-adapted enzymes: challenges, innovations and future perspective.

Authors:  Anil Kumar; Srijana Mukhia; Rakshak Kumar
Journal:  3 Biotech       Date:  2021-09-06       Impact factor: 2.893

Review 4.  Strategies for Natural Products Discovery from Uncultured Microorganisms.

Authors:  Khorshed Alam; Muhammad Nazeer Abbasi; Jinfang Hao; Youming Zhang; Aiying Li
Journal:  Molecules       Date:  2021-05-17       Impact factor: 4.411

Review 5.  Antimicrobial Resistance Gene Detection Methods for Bacteria in Animal-Based Foods: A Brief Review of Highlights and Advantages.

Authors:  Beatriz S P Galhano; Rafaela G Ferrari; Pedro Panzenhagen; Ana Carolina S de Jesus; Carlos A Conte-Junior
Journal:  Microorganisms       Date:  2021-04-26

6.  The effects of combined environmental factors on the intestinal flora of mice based on ground simulation experiments.

Authors:  Peiming Sun; Jiaqi Yang; Bo Wang; Huan Ma; Yin Zhang; Jinhu Guo; Xiaoping Chen; Jianwei Zhao; Hongwei Sun; Jianwu Yang; Heming Yang; Yan Cui
Journal:  Sci Rep       Date:  2021-05-31       Impact factor: 4.379

7.  An uncharacterized protein from the metagenome with no obvious homology to known lipases shows excellent alkaline lipase properties and potential applications in the detergent industry.

Authors:  Yue Xiao; Yi-De Liu; Ge Yuan; Run-Qian Mao; Gang Li
Journal:  Biotechnol Lett       Date:  2021-10-26       Impact factor: 2.461

Review 8.  Diversity, Ecological Role and Biotechnological Potential of Antarctic Marine Fungi.

Authors:  Stefano Varrella; Giulio Barone; Michael Tangherlini; Eugenio Rastelli; Antonio Dell'Anno; Cinzia Corinaldesi
Journal:  J Fungi (Basel)       Date:  2021-05-17

9.  Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer.

Authors:  Ohana Y A Costa; Mattias de Hollander; Agata Pijl; Binbin Liu; Eiko E Kuramae
Journal:  Microbiome       Date:  2020-06-01       Impact factor: 14.650

10.  Structuring biofilm communities living in pesticide contaminated water.

Authors:  Jhenifer Yonara Lima; Cassiano Moreira; Paloma Nathane Nunes Freitas; Luiz Ricardo Olchanheski; Sonia Alvim Veiga Pileggi; Rafael Mazer Etto; Christopher Staley; Michael Jay Sadowsky; Marcos Pileggi
Journal:  Heliyon       Date:  2020-05-19
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