Literature DB >> 28814111

Ligand efficiency metrics in drug discovery: the pros and cons from a practical perspective.

Maria Maddalena Cavalluzzi1, Giuseppe Felice Mangiatordi1, Orazio Nicolotti1, Giovanni Lentini1.   

Abstract

INTRODUCTION: Ligand efficiency metrics are almost universally accepted as a valuable indicator of compound quality and an aid to reduce attrition. Areas covered: In this review, the authors describe ligand efficiency metrics giving a balanced overview on their merits and points of weakness in order to enable the readers to gain an informed opinion. Relevant theoretical breakthroughs and drug-like properties are also illustrated. Several recent exemplary case studies are discussed in order to illustrate the main fields of application of ligand efficiency metrics. Expert opinion: As a medicinal chemist guide, ligand efficiency metrics perform in a context- and chemotype-dependent manner; thus, they should not be used as a magic box. Since the 'big bang' of efficiency metrics occurred more or less ten years ago and the average time to develop a new drug is over the same period, the next few years will give a clearer outlook on the increased rate of success, if any, gained by means of these new intriguing tools.

Entities:  

Keywords:  Drug design; docking; drug development; fragment-based drug discovery; free energy of binding; structure activity relationships

Mesh:

Substances:

Year:  2017        PMID: 28814111     DOI: 10.1080/17460441.2017.1365056

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  26 in total

1.  Homology models of mouse and rat estrogen receptor-α ligand-binding domain created by in silico mutagenesis of a human template: molecular docking with 17ß-estradiol, diethylstilbestrol, and paraben analogs.

Authors:  Thomas L Gonzalez; James M Rae; Justin A Colacino; Rudy J Richardson
Journal:  Comput Toxicol       Date:  2018-11-28

2.  Efficient Hit-to-Lead Searching of Kinase Inhibitor Chemical Space via Computational Fragment Merging.

Authors:  Grigorii V Andrianov; Wern Juin Gabriel Ong; Ilya Serebriiskii; John Karanicolas
Journal:  J Chem Inf Model       Date:  2021-11-11       Impact factor: 4.956

3.  Bioisosteric Modification of To042: Synthesis and Evaluation of Promising Use-Dependent Inhibitors of Voltage-Gated Sodium Channels.

Authors:  Gualtiero Milani; Maria Maddalena Cavalluzzi; Concetta Altamura; Antonella Santoro; Mariagrazia Perrone; Marilena Muraglia; Nicola Antonio Colabufo; Filomena Corbo; Elisabetta Casalino; Carlo Franchini; Isabella Pisano; Jean-François Desaphy; Antonio Carrieri; Alessia Carocci; Giovanni Lentini
Journal:  ChemMedChem       Date:  2021-10-05       Impact factor: 3.540

Review 4.  Rethinking drug design in the artificial intelligence era.

Authors:  Petra Schneider; W Patrick Walters; Alleyn T Plowright; Norman Sieroka; Jennifer Listgarten; Robert A Goodnow; Jasmin Fisher; Johanna M Jansen; José S Duca; Thomas S Rush; Matthias Zentgraf; John Edward Hill; Elizabeth Krutoholow; Matthias Kohler; Jeff Blaney; Kimito Funatsu; Chris Luebkemann; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2019-12-04       Impact factor: 84.694

5.  Coumarin-Chalcone Hybrids as Inhibitors of MAO-B: Biological Activity and In Silico Studies.

Authors:  Guillermo Moya-Alvarado; Osvaldo Yañez; Nicole Morales; Angélica González-González; Carlos Areche; Marco Tulio Núñez; Angélica Fierro; Olimpo García-Beltrán
Journal:  Molecules       Date:  2021-04-22       Impact factor: 4.411

6.  Molecular Simplification of Natural Products: Synthesis, Antibacterial Activity, and Molecular Docking Studies of Berberine Open Models.

Authors:  Gualtiero Milani; Maria Maddalena Cavalluzzi; Roberta Solidoro; Lara Salvagno; Laura Quintieri; Angela Di Somma; Antonio Rosato; Filomena Corbo; Carlo Franchini; Angela Duilio; Leonardo Caputo; Solomon Habtemariam; Giovanni Lentini
Journal:  Biomedicines       Date:  2021-04-22

7.  Evaluation of new antihypertensive drugs designed in silico using Thermolysin as a target.

Authors:  Desmond MacLeod-Carey; Eduardo Solis-Céspedes; Emilio Lamazares; Karel Mena-Ulecia
Journal:  Saudi Pharm J       Date:  2020-04-02       Impact factor: 4.330

Review 8.  From Riluzole to Dexpramipexole via Substituted-Benzothiazole Derivatives for Amyotrophic Lateral Sclerosis Disease Treatment: Case Studies.

Authors:  Serge Mignani; Jean-Pierre Majoral; Jean-François Desaphy; Giovanni Lentini
Journal:  Molecules       Date:  2020-07-22       Impact factor: 4.411

9.  Densely Functionalized 2-Methylideneazetidines: Evaluation as Antibacterials.

Authors:  Giovanni Petrillo; Cinzia Tavani; Lara Bianchi; Alice Benzi; Maria Maddalena Cavalluzzi; Lara Salvagno; Laura Quintieri; Annalisa De Palma; Leonardo Caputo; Antonio Rosato; Giovanni Lentini
Journal:  Molecules       Date:  2021-06-25       Impact factor: 4.411

10.  Aromatic Rings Commonly Used in Medicinal Chemistry: Force Fields Comparison and Interactions With Water Toward the Design of New Chemical Entities.

Authors:  Marcelo D Polêto; Victor H Rusu; Bruno I Grisci; Marcio Dorn; Roberto D Lins; Hugo Verli
Journal:  Front Pharmacol       Date:  2018-04-24       Impact factor: 5.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.