Literature DB >> 28810057

Crowders and Cosolvents-Major Contributors to the Cellular Milieu and Efficient Means to Counteract Environmental Stresses.

Mimi Gao1, Christoph Held2, Satyajit Patra1, Loana Arns1, Gabriele Sadowski2, Roland Winter1.   

Abstract

The free energy and conformational landscape of biomolecular systems as well as biochemical reactions depend not only on temperature and pressure, but also on the particular solution conditions. Such conditions include the effects of cosolvents (for example osmolytes) and macromolecular crowding, which are crucial components to understand the energetics and kinetics of biological processes in living system. Such conditions are also important for the understanding of many debilitating diseases, such as those where misfolding and amyloid formation of proteins are involved. Moreover, understanding their effects on biomolecular processes is prerequisite for designing industrially relevant enzymatic reactions, which seldom take place under neat conditions. Here, we review and discuss experimental and theoretical studies on the characterization of cosolvent and crowding induced effects in biologically relevant systems, approaching even the complexity of living organisms. In particular, we focus on cosolvent and crowding effects on the conformational equilibrium and folding kinetics of proteins and nucleic acids as well as on enzymatic reactions, including their effects on the temperature and pressure dependence of these processes. By presenting a few representative examples, we show how such effects are unveiled and described in thermodynamic and kinetic terms.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  cosolvents; crowding; high pressure; nucleic acids; proteins

Mesh:

Substances:

Year:  2017        PMID: 28810057     DOI: 10.1002/cphc.201700762

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  14 in total

1.  On the Origin of Microtubules' High-Pressure Sensitivity.

Authors:  Mimi Gao; Melanie Berghaus; Simone Möbitz; Vitor Schuabb; Nelli Erwin; Marius Herzog; Karin Julius; Christian Sternemann; Roland Winter
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

Review 2.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

3.  Exploring the effects of cosolutes and crowding on the volumetric and kinetic profile of the conformational dynamics of a poly dA loop DNA hairpin: a single-molecule FRET study.

Authors:  Satyajit Patra; Vitor Schuabb; Irena Kiesel; Jim-Marcel Knop; Rosario Oliva; Roland Winter
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

4.  Cleavage-Resistant Protein Labeling With Hydrophilic Trityl Enables Distance Measurements In-Cell.

Authors:  Zikri Hasanbasri; Kevin Singewald; Teresa D Gluth; Benoit Driesschaert; Sunil Saxena
Journal:  J Phys Chem B       Date:  2021-05-13       Impact factor: 3.466

5.  Alteration of the Conformational Dynamics of a DNA Hairpin by α-Synuclein in the Presence of Aqueous Two-Phase Systems.

Authors:  Sanjib K Mukherjee; Jim-Marcel Knop; Simone Möbitz; Roland H A Winter
Journal:  Chemistry       Date:  2020-08-06       Impact factor: 5.236

6.  Macromolecular crowding effects on the kinetics of opposing reactions catalyzed by alcohol dehydrogenase.

Authors:  Xander E Wilcox; Charmaine B Chung; Kristin M Slade
Journal:  Biochem Biophys Rep       Date:  2021-02-20

7.  Alteration of Protein Binding Affinities by Aqueous Two-Phase Systems Revealed by Pressure Perturbation.

Authors:  Rosario Oliva; Sudeshna Banerjee; Hasan Cinar; Christiane Ehrt; Roland Winter
Journal:  Sci Rep       Date:  2020-05-15       Impact factor: 4.379

8.  High pressures increase α-chymotrypsin enzyme activity under perchlorate stress.

Authors:  Stewart Gault; Michel W Jaworek; Roland Winter; Charles S Cockell
Journal:  Commun Biol       Date:  2020-10-02

9.  Confinement Effects on Glass-Forming Aqueous Dimethyl Sulfoxide Solutions.

Authors:  Dominik Demuth; Melanie Reuhl; Moritz Hopfenmüller; Nail Karabas; Simon Schoner; Michael Vogel
Journal:  Molecules       Date:  2020-09-09       Impact factor: 4.411

10.  The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid-liquid phase separation: a pressure-jump relaxation study.

Authors:  Hasan Cinar; Roland Winter
Journal:  Sci Rep       Date:  2020-10-14       Impact factor: 4.379

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