Literature DB >> 28804520

Fast Simulation of Lipid Vesicle Deformation Using Spherical Harmonic Approximation.

Michael Mikucki1, Yongcheng Zhou2.   

Abstract

Lipid vesicles appear ubiquitously in biological systems. Understanding how the mechanical and intermolecular interactions deform vesicle membranes is a fundamental question in biophysics. In this article we develop a fast algorithm to compute the surface configurations of lipid vesicles by introducing surface harmonic functions to approximate the membrane surface. This parameterization allows an analytical computation of the membrane curvature energy and its gradient for the efficient minimization of the curvature energy using a nonlinear conjugate gradient method. Our approach drastically reduces the degrees of freedom for approximating the membrane surfaces compared to the previously developed finite element and finite difference methods. Vesicle deformations with a reduced volume larger than 0.65 can be well approximated by using as small as 49 surface harmonic functions. The method thus has a great potential to reduce the computational expense of tracking multiple vesicles which deform for their interaction with external fields.

Entities:  

Keywords:  35Q92; 65M70; 92C40; Lipid bilayer; curvature energy; fast algorithm; surface harmonics

Year:  2016        PMID: 28804520      PMCID: PMC5552105          DOI: 10.4208/cicp.OA-2015-0029

Source DB:  PubMed          Journal:  Commun Comput Phys        ISSN: 1815-2406            Impact factor:   3.246


  21 in total

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Authors:  V Heinrich; B Bozic; S Svetina; B Zeks
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

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Journal:  Curr Opin Cell Biol       Date:  2003-08       Impact factor: 8.382

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Journal:  J Math Biol       Date:  2007-08-15       Impact factor: 2.259

5.  Membrane deformations induced by the matrix protein of vesicular stomatitis virus in a minimal system.

Authors:  Jérôme Solon; Olivier Gareil; Patricia Bassereau; Yves Gaudin
Journal:  J Gen Virol       Date:  2005-12       Impact factor: 3.891

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Authors:  Y C Zhou; Benzhuo Lu; Alemayehu A Gorfe
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-10-28

7.  Large deformation of red blood cell ghosts in a simple shear flow.

Authors:  C D Eggleton; A S Popel
Journal:  Phys Fluids (1994)       Date:  1998-07-01       Impact factor: 3.521

8.  A diffuse-interface method for two-phase flows with soluble surfactants.

Authors:  Knut Erik Teigen; Peng Song; John Lowengrub; Axel Voigt
Journal:  J Comput Phys       Date:  2011-01-20       Impact factor: 3.553

9.  Dynamics of multicomponent vesicles in a viscous fluid.

Authors:  Jin Sun Sohn; Yu-Hau Tseng; Shuwang Li; Axel Voigt; John S Lowengrub
Journal:  J Comput Phys       Date:  2010       Impact factor: 3.553

10.  Geometric modeling of subcellular structures, organelles, and multiprotein complexes.

Authors:  Xin Feng; Kelin Xia; Yiying Tong; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2012-11-21       Impact factor: 2.747

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