| Literature DB >> 28804505 |
Giuseppe Mastrangelo1, Angela Carta2,3, Cecilia Arici2,3, Sofia Pavanello1, Stefano Porru3,4.
Abstract
BACKGROUND: No etiological prediction model incorporating biomarkers is available to predict bladder cancer risk associated with occupational exposure to aromatic amines.Entities:
Keywords: Logistic models; Occupational exposure; ROC curve; Risk; Urinary bladder neoplasms
Year: 2017 PMID: 28804505 PMCID: PMC5549308 DOI: 10.1186/s12995-017-0167-4
Source DB: PubMed Journal: J Occup Med Toxicol ISSN: 1745-6673 Impact factor: 2.646
Occupational AA-related BC cases and other BC cases by DNA adducts, age, smoking categories, pack-years, coffee consumption and genotypes
| Variables | 15 AA-related BC cases | 184 other BC cases | |||
|---|---|---|---|---|---|
| Mean (SD) | Number (%) | Mean (SD) | Number (%) | ||
| DNA adducts×108 nucleotides (ln) | 1.40 (1.5) | 0.76 (1.2) | |||
| ≥1 | 11 (73.3) | 69 (37.5) | |||
| Age (years) | 60.0 (10.4) | 63.4 (11.2) | |||
| ≤ 56.9 years | 7 (46.7) | 43 (23.4) | |||
| 57–65.9 years | 3 (20.0) | 50 (27.2) | |||
| 66–70.9 years | 3 (20.0) | 44 (23.9) | |||
| ≥ 71 years | 2 (13.3) | 47 (25.5) | |||
| Smoking (categories) | |||||
| Non Smokers & Ex Smokers quitting >20 years | 2 (13.3) | 35 (19.0) | |||
| Ex Smokers quitting <20 years | 1 (6.7) | 60 (32.6) | |||
| Current smokers | 12 (75.0) | 87 (47.3) | |||
| Pack years (cigarettes smoked lifetime) | 31.5 (12.3) | 35.6 (26.2) | |||
| ≤ 18.9 | 1 (6.7) | 46 (25.1) | |||
| 19–32.9 | 8 (53.3) | 45 (24.6) | |||
| 33–46.9 | 4 (26.7) | 46 (24.6) | |||
| ≥ 47 | 2 (13.3) | 47 (25.7) | |||
| Coffee consumption (weighted mean) | 2.1 (1.7) | 2.4 (2.4) | |||
| ≤ 1 cup/day | 6 (40.0) | 71 (38.8) | |||
| 2 cups/day | 4 (26.7) | 36 (19.7) | |||
| 3 caps/day | 3 (20.0) | 32 (17.5) | |||
| ≥ 4 cups/day | 2 (13.3) | 44 (24.0) | |||
| Genotypes |
| 12 (80.0) | 117 (63.9) | ||
|
| 3 (20.0) | 38 (20.8) | |||
|
| 5 (33.3) | 92 (50.3) | |||
|
| 4 (26.7) | 60 (32.8) | |||
|
| 10 (66.7) | 111 (60.7) | |||
|
| 1 (6.7) | 6 (3.3) | |||
|
| 7 (46.7) | 132 (72.1) | |||
|
| 4 (26.7) | 63 (34.4) | |||
|
| 12 (80.0) | 156 (82.3) | |||
|
| 7 (46.7) | 98 (53.4) | |||
|
| 6 (40.0) | 103 (56.3) | |||
|
| 7 (46.7) | 113 (61.8) | |||
GSTM1 Glutathione S-transferase M1, GSTT1 Glutathione S-transferase T1, GSTP1 Glutathione S-transferase P1, NAT1 N-acetyltransferase isozymes 1, NAT2 N-acetyltransferase isozymes 2, MPO Myeloperoxidase, MnSOD Manganese Superoxide Dismutase, COMT Catechol-O-methyltransferase, CYP1B1 Cytochrome p450 1B1, XRCC1 X-ray repair cross-complementing protein 1, XRCC3 X-ray repair cross-complementing protein 3, XPD xeroderma pigmentosum group D
Logistic regression (full and short models)
| Variables | Classes | Full model | Short model | ||||
|---|---|---|---|---|---|---|---|
| OR | 95% CI |
| OR | 95% CI |
| ||
| Age (years)a | 57–65.9 | 0.12 | 0.01–0.98 | 0.048 | |||
| 66–70.9 | 0.29 | 0.04–2.25 | 0.239 | ||||
| ≥ 71 | 0.10 | 0.01–1.07 | 0.056 | ||||
| Smokingb | Ex-smokers | 0.05 | 0.00–1.47 | 0.083 | 0.11 | 0.01–1.49 | 0.096 |
| Smokers | 1.16 | 0.16–8.60 | 0.887 | 1.56 | 0.31–7.94 | 0.589 | |
| Coffee consumptionc | 2 | 0.63 | 0.09–4.64 | 0.654 | |||
| 3 | 1.96 | 0.27–14.24 | 0.505 | ||||
| ≥4 | 0.05 | 0.00–0.86 | 0.039 | ||||
| DNA adductsd | ≥1 | 19.20 | 2.52–146. | 0.004 | 6.02 | 1.66–21.8 | 0.006 |
| Genotypese |
| 3.01 | 0.51–17.7 | 0.223 | |||
|
| 0.29 | 0.04–1.92 | 0.198 | ||||
|
| 0.19 | 0.03–1.08 | 0.061 | 0.41 | 0.12–1.38 | 0.150 | |
|
| 0.27 | 0.05–1.52 | 0.139 | ||||
|
| 2.55 | 0.52–12.6 | 0.25 | ||||
|
| 1.38 | 0.03–65.1 | 0.871 | ||||
|
| 0.05 | 0.01–0.39 | 0.005 | 0.21 | 0.06–0.72 | 0.014 | |
|
| 0.30 | 0.06–1.49 | 0.142 | ||||
|
| 0.27 | 0.03–2.42 | 0.24 | ||||
|
| 0.97 | 0.22–4.22 | 0.966 | ||||
|
| 0.38 | 0.09–1.68 | 0.203 | 0.40 | 0.12–1.34 | 0.139 | |
|
| 0.31 | 0.05–1.81 | 0.195 | ||||
| Constant term | 5.95 | 0.06–545. | 0.439 | 0.18 | 0.03–1.30 | 0.09 | |
| Reference groups: apatients with ≤56.9 years; bnon smokers and ex-smokers from >20 years; cpatients with consumption of ≤1 cup/day; dpatients with <1 (logarithm values) of DNA adducts×108 nucleotides; epatients with genotype values set at 0 (see text for definition). | |||||||
| Measures of fit for logistic regression | Full model | Short model | |||||
| R-square | 0.389 | 0.228 | |||||
| Area under the ROC curve | 0.931 | 0.856 | |||||
| Pearson chi-square test: |
| 0.087 | 0.826 | ||||
| no. covariates | 197 | 44 | |||||
| Hosmer-Lemeshow test: |
| 0.130 | 0.942 | ||||
| no. groups | 10 | 10 | |||||
Fig. 1ROC curves obtained with the full model (left) and short model (right) of logistic regression; the AUC and its standard error is reported below the graph
Classification of 15 AA-related BC cases (D) and 184 other BC cases (−D) according to the full model (left panel) or short model (right panel) of logistic regression
| Classified | True | Total | Classified | True | Total | ||
|---|---|---|---|---|---|---|---|
| D | –D | D | –D | ||||
| Positive | 13 | 15 | 28 | Positive | 13 | 47 | 60 |
| Negative | 2 | 169 | 171 | Negative | 2 | 137 | 139 |
| Total | 15 | 184 | 199 | Total | 15 | 184 | 199 |
| Sensitivity | 86.7% | Sensitivity | 86.7% | ||||
| Specificity | 91.9% | Specificity | 74.5% | ||||
| Positive predictive value | 46.4% | Positive predictive value | 21.7% | ||||
| Negative predictive value | 98.8% | Negative predictive value | 98.6% | ||||
| Correctly classified | 91.5% | Correctly classified | 75.4% | ||||
| Net Benefit per 100 patients | +4.9 | Net Benefit per 100 patients | + 4.1 | ||||
The risk threshold R (optimal cut-off point of predicted probability provided by the program) was 0.181 and 0.093 in the left and right panel, respectively. Net Benefit per 100 patients calculated from the above values
Classification of 15 AA-related BC cases (D) and 184 other BC cases (−D) according to the full model (left panel) or short model (right panel) of logistic regression
| Classified | True | Total | Classified | True | Total | ||
|---|---|---|---|---|---|---|---|
| D | –D | D | –D | ||||
| Positive | 14 | 34 | 48 | Positive | 14 | 73 | 87 |
| Negative | 1 | 150 | 151 | Negative | 1 | 111 | 112 |
| Total | 15 | 184 | 199 | Total | 15 | 184 | 199 |
| Sensitivity | 93.3% | Sensitivity | 93.3% | ||||
| Specificity | 81.5% | Specificity | 60.3% | ||||
| Positive predictive value | 29.2% | Positive predictive value | 16.1% | ||||
| Negative predictive value | 99.3% | Negative predictive value | 99.1% | ||||
| Correctly classified | 82.4% | Correctly classified | 62.8% | ||||
| Net Benefit per 100 patients | + 5.3 | Net Benefit per 100 patients | + 5.1 | ||||
The risk threshold R (purposely chosen cut-off point of predicted probability) was 0.09 and 0.05 in the left and right panel, respectively. Net Benefit per 100 patients calculated from the above values
Fig. 2Decision curves of Net Benefit per 100 patients against different values of prevalence of AA-related BC, separately according to different values of risk threshold (R), i.e. cut-off point of predicted probability