Literature DB >> 28800257

The Inherent Asymmetry of DNA Replication.

Jonathan Snedeker1, Matthew Wooten1, Xin Chen1.   

Abstract

Semiconservative DNA replication has provided an elegant solution to the fundamental problem of how life is able to proliferate in a way that allows cells, organisms, and populations to survive and replicate many times over. Somewhat lost, however, in our admiration for this mechanism is an appreciation for the asymmetries that occur in the process of DNA replication. As we discuss in this review, these asymmetries arise as a consequence of the structure of the DNA molecule and the enzymatic mechanism of DNA synthesis. Increasing evidence suggests that asymmetries in DNA replication are able to play a central role in the processes of adaptation and evolution by shaping the mutagenic landscape of cells. Additionally, in eukaryotes, recent work has demonstrated that the inherent asymmetries in DNA replication may play an important role in the process of chromatin replication. As chromatin plays an essential role in defining cell identity, asymmetries generated during the process of DNA replication may play critical roles in cell fate decisions related to patterning and development.

Entities:  

Keywords:  DNA replication; asymmetric; chromatin; epigenetic inheritance; histones

Mesh:

Substances:

Year:  2017        PMID: 28800257      PMCID: PMC5695668          DOI: 10.1146/annurev-cellbio-100616-060447

Source DB:  PubMed          Journal:  Annu Rev Cell Dev Biol        ISSN: 1081-0706            Impact factor:   13.827


  153 in total

1.  Gene essentiality determines chromosome organisation in bacteria.

Authors:  Eduardo P C Rocha; Antoine Danchin
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  Nucleosome eviction and activated transcription require p300 acetylation of histone H3 lysine 14.

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

3.  N6-methyladenine DNA modification in Drosophila.

Authors:  Guoqiang Zhang; Hua Huang; Di Liu; Ying Cheng; Xiaoling Liu; Wenxin Zhang; Ruichuan Yin; Dapeng Zhang; Peng Zhang; Jianzhao Liu; Chaoyi Li; Baodong Liu; Yuewan Luo; Yuanxiang Zhu; Ning Zhang; Shunmin He; Chuan He; Hailin Wang; Dahua Chen
Journal:  Cell       Date:  2015-04-30       Impact factor: 41.582

4.  Symmetrical modification within a nucleosome is not required globally for histone lysine methylation.

Authors:  Xiuzhen Chen; Jun Xiong; Mo Xu; She Chen; Bing Zhu
Journal:  EMBO Rep       Date:  2011-02-18       Impact factor: 8.807

Review 5.  Enzymes and reactions at the eukaryotic DNA replication fork.

Authors:  R A Bambara; R S Murante; L A Henricksen
Journal:  J Biol Chem       Date:  1997-02-21       Impact factor: 5.157

Review 6.  Transcription-replication encounters, consequences and genomic instability.

Authors:  Anne Helmrich; Monica Ballarino; Evgeny Nudler; Laszlo Tora
Journal:  Nat Struct Mol Biol       Date:  2013-04       Impact factor: 15.369

Review 7.  A model for specification of the left-right axis in vertebrates.

Authors:  A J Klar
Journal:  Trends Genet       Date:  1994-11       Impact factor: 11.639

Review 8.  Epigenetic differences between sister chromatids?

Authors:  Peter M Lansdorp; Ester Falconer; Jiang Tao; Julie Brind'Amour; Ulrike Naumann
Journal:  Ann N Y Acad Sci       Date:  2012-08       Impact factor: 5.691

9.  DNA looping mediates nucleosome transfer.

Authors:  Lucy D Brennan; Robert A Forties; Smita S Patel; Michelle D Wang
Journal:  Nat Commun       Date:  2016-11-03       Impact factor: 14.919

10.  Implications of fidelity difference between the leading and the lagging strand of DNA for the acceleration of evolution.

Authors:  Mitsuru Furusawa
Journal:  Front Oncol       Date:  2012-10-16       Impact factor: 6.244

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  9 in total

Review 1.  Asymmetric Histone Inheritance in Asymmetrically Dividing Stem Cells.

Authors:  Matthew Wooten; Rajesh Ranjan; Xin Chen
Journal:  Trends Genet       Date:  2019-11-18       Impact factor: 11.639

2.  Symmetry from Asymmetry or Asymmetry from Symmetry?

Authors:  Elizabeth W Kahney; Rajesh Ranjan; Ryan J Gleason; Xin Chen
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2018-01-18

3.  Superresolution imaging of chromatin fibers to visualize epigenetic information on replicative DNA.

Authors:  Yingying Li; Jonathan Snedeker; Matthew Wooten; Zehra F Nizami; Joseph G Gall; Xin Chen
Journal:  Nat Protoc       Date:  2020-02-12       Impact factor: 13.491

4.  Asymmetric histone inheritance via strand-specific incorporation and biased replication fork movement.

Authors:  Matthew Wooten; Jonathan Snedeker; Zehra F Nizami; Xinxing Yang; Rajesh Ranjan; Elizabeth Urban; Jee Min Kim; Joseph Gall; Jie Xiao; Xin Chen
Journal:  Nat Struct Mol Biol       Date:  2019-07-29       Impact factor: 15.369

5.  Mutation-rate plasticity and the germline of unicellular organisms.

Authors:  Duur K Aanen; Alfons J M Debets
Journal:  Proc Biol Sci       Date:  2019-05-15       Impact factor: 5.349

6.  A differential equation, deduced from a DNA-type genetic algorithm with the lagging-strand-biased mutagenesis.

Authors:  Ichiro Fujihara; Mitsuru Furusawa
Journal:  Heliyon       Date:  2022-03-26

7.  Mitotic drive in asymmetric epigenetic inheritance.

Authors:  Rajesh Ranjan; Xin Chen
Journal:  Biochem Soc Trans       Date:  2022-04-29       Impact factor: 4.919

8.  Arbidol inhibits human esophageal squamous cell carcinoma growth in vitro and in vivo through suppressing ataxia telangiectasia and Rad3-related protein kinase.

Authors:  Ning Yang; Xuebo Lu; Yanan Jiang; Lili Zhao; Donghao Wang; Yaxing Wei; Yin Yu; Myoung Ok Kim; Kyle Vaughn Laster; Xin Li; Baoyin Yuan; Zigang Dong; Kangdong Liu
Journal:  Elife       Date:  2022-09-09       Impact factor: 8.713

Review 9.  Mitotic Inheritance of PRC2-Mediated Silencing: Mechanistic Insights and Developmental Perspectives.

Authors:  Alice Hugues; Chean Sern Jacobs; François Roudier
Journal:  Front Plant Sci       Date:  2020-03-09       Impact factor: 5.753

  9 in total

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