Literature DB >> 28798238

Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans.

Jinchuan Hu1, Christopher P Selby1, Sheera Adar1,2, Ogun Adebali1, Aziz Sancar3.   

Abstract

Nucleotide excision repair is a major DNA repair mechanism in all cellular organisms. In this repair system, the DNA damage is removed by concerted dual incisions bracketing the damage and at a precise distance from the damage. Here, we review the basic mechanisms of excision repair in Escherichia coli and humans and the recent genome-wide mapping of DNA damage and repair in these organisms at single-nucleotide resolution.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  carcinogenesis; chemotherapy; damage mapping; damage recognition; kinetic proofreading; repair mapping

Mesh：

Year:  2017        PMID： 28798238      PMCID： PMC5612094          DOI： 10.1074/jbc.R117.807453

Source DB:  PubMed          Journal:  J Biol Chem        ISSN： 0021-9258            Impact factor:   5.157


  100 in total

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2.  Reconstruction of bacterial transcription-coupled repair at single-molecule resolution.

Authors:  Jun Fan; Mathieu Leroux-Coyau; Nigel J Savery; Terence R Strick
Journal:  Nature       Date:  2016-08-03       Impact factor: 49.962

3.  Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3' leads to 5' exonuclease activity in deoxyribonucleic acid polymerases.

Authors:  D Brutlag; A Kornberg
Journal:  J Biol Chem       Date:  1972-01-10       Impact factor: 5.157

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Authors:  D Mu; D S Hsu; A Sancar
Journal:  J Biol Chem       Date:  1996-04-05       Impact factor: 5.157

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Authors:  L Aravind; D R Walker; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

6.  Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53.

Authors:  M F Denissenko; A Pao; M Tang; G P Pfeifer
Journal:  Science       Date:  1996-10-18       Impact factor: 47.728

Review 7.  Thermodynamic cooperativity and kinetic proofreading in DNA damage recognition and repair.

Authors:  Joyce T Reardon; Aziz Sancar
Journal:  Cell Cycle       Date:  2004-02       Impact factor: 4.534

8.  Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5' and the 6th phosphodiester bond 3' to the photodimer.

Authors:  J C Huang; D L Svoboda; J T Reardon; A Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-15       Impact factor: 11.205

9.  Measuring the formation and repair of UV damage at the DNA sequence level by ligation-mediated PCR.

Authors:  Ahmad Besaratinia; Gerd P Pfeifer
Journal:  Methods Mol Biol       Date:  2012

10.  Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli.

Authors:  Huiyi Chen; Katsuyuki Shiroguchi; Hao Ge; Xiaoliang Sunney Xie
Journal:  Mol Syst Biol       Date:  2015-01-12       Impact factor: 11.429
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  33 in total

1.  Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues.

Authors:  Yanyan Yang; Ogun Adebali; Gang Wu; Christopher P Selby; Yi-Ying Chiou; Naim Rashid; Jinchuan Hu; John B Hogenesch; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

2.  Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells.

Authors:  Wentao Li; Wenjie Liu; Ayano Kakoki; Rujin Wang; Ogun Adebali; Yuchao Jiang; Aziz Sancar
Journal:  J Biol Chem       Date:  2019-02-26       Impact factor: 5.157

3.  A panorama of transcription-coupled repair in yeast chromatin.

Authors:  Dong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-12       Impact factor: 11.205

4.  The response of Escherichia coli to the alkylating agents chloroacetaldehyde and styrene oxide.

Authors:  Mark M Muenter; Ariel Aiken; Jadesola O Akanji; Samir Baig; Sirine Bellou; Alyssa Carlson; Charles Conway; Courtney M Cowell; Nicholas A DeLateur; Alexis Hester; Christopher Joshi; Caitlin Kramer; Becky S Leifer; Emma Nash; Macee H Qi; Meghan Travers; Kelly C Wong; Man Hu; Na Gou; Roger W Giese; April Z Gu; Penny J Beuning
Journal:  Mutat Res Genet Toxicol Environ Mutagen       Date:  2019-02-07       Impact factor: 2.873

5.  Single-nucleotide resolution analysis of nucleotide excision repair of ribosomal DNA in humans and mice.

Authors:  Yanyan Yang; Jinchuan Hu; Christopher P Selby; Wentao Li; Askar Yimit; Yuchao Jiang; Aziz Sancar
Journal:  J Biol Chem       Date:  2018-11-09       Impact factor: 5.157

6.  Genome-wide mapping of nucleotide excision repair with XR-seq.

Authors:  Jinchuan Hu; Wentao Li; Ogun Adebali; Yanyan Yang; Onur Oztas; Christopher P Selby; Aziz Sancar
Journal:  Nat Protoc       Date:  2019-01       Impact factor: 13.491

7.  NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast.

Authors:  Amelia J Hodges; Dalton A Plummer; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2018-11-14

Review 8.  Detecting Rare Mutations and DNA Damage with Sequencing-Based Methods.

Authors:  Daniel B Sloan; Amanda K Broz; Joel Sharbrough; Zhiqiang Wu
Journal:  Trends Biotechnol       Date:  2018-03-14       Impact factor: 19.536

9.  Mycobacteria excise DNA damage in 12- or 13-nucleotide-long oligomers by prokaryotic-type dual incisions and performs transcription-coupled repair.

Authors:  Christopher P Selby; Laura A Lindsey-Boltz; Yanyan Yang; Aziz Sancar
Journal:  J Biol Chem       Date:  2020-10-21       Impact factor: 5.157

10.  Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.

Authors:  Wentao Li; Ogun Adebali; Yanyan Yang; Christopher P Selby; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205
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