Literature DB >> 28786136

Estimation of smooth ROC curves for biomarkers with limits of detection.

Leonidas E Bantis1, Qingxiang Yan1, John V Tsimikas2, Ziding Feng1.   

Abstract

Protein biomarkers found in plasma are commonly used for cancer screening and early detection. Measurements obtained by such markers are often based on different assays that may not support detection of accurate measurements due to a limit of detection. The ROC curve is the most popular statistical tool for the evaluation of a continuous biomarker. However, in situations where limits of detection exist, the empirical ROC curve fails to provide a valid estimate for the whole spectrum of the false positive rate (FPR). Hence, crucial information regarding the performance of the marker in high sensitivity and/or high specificity values is not revealed. In this paper, we address this problem and propose methods for constructing ROC curve estimates for all possible FPR values. We explore flexible parametric methods, transformations to normality, and robust kernel-based and spline-based approaches. We evaluate our methods though simulations and illustrate them in colorectal and pancreatic cancer data.
Copyright © 2017 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Box-Cox; ROC; biomarker; cancer; censoring; classification; early detection; generalized gamma; kernels; limit of detection; spline

Mesh:

Substances:

Year:  2017        PMID: 28786136      PMCID: PMC5679135          DOI: 10.1002/sim.7394

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  18 in total

Review 1.  Analysis and design issues for studies using censored biomarker measurements with an example of viral load measurements in HIV clinical trials.

Authors:  M D Hughes
Journal:  Stat Med       Date:  2000-12-15       Impact factor: 2.373

Review 2.  Phases of biomarker development for early detection of cancer.

Authors:  M S Pepe; R Etzioni; Z Feng; J D Potter; M L Thompson; M Thornquist; M Winget; Y Yasui
Journal:  J Natl Cancer Inst       Date:  2001-07-18       Impact factor: 13.506

3.  Survival estimation through the cumulative hazard function with monotone natural cubic splines.

Authors:  Leonidas E Bantis; John V Tsimikas; Stelios D Georgiou
Journal:  Lifetime Data Anal       Date:  2012-03-08       Impact factor: 1.588

4.  Receiver operating characteristic curve inference from a sample with a limit of detection.

Authors:  Neil J Perkins; Enrique F Schisterman; Albert Vexler
Journal:  Am J Epidemiol       Date:  2006-11-16       Impact factor: 4.897

5.  Pooling biospecimens and limits of detection: effects on ROC curve analysis.

Authors:  Sunni L Mumford; Enrique F Schisterman; Albert Vexler; Aiyi Liu
Journal:  Biostatistics       Date:  2006-03-10       Impact factor: 5.899

6.  Sequential Validation of Blood-Based Protein Biomarker Candidates for Early-Stage Pancreatic Cancer.

Authors:  Michela Capello; Leonidas E Bantis; Ghislaine Scelo; Yang Zhao; Peng Li; Dilsher S Dhillon; Nikul J Patel; Deepali L Kundnani; Hong Wang; James L Abbruzzese; Anirban Maitra; Margaret A Tempero; Randall Brand; Matthew A Firpo; Sean J Mulvihill; Matthew H Katz; Paul Brennan; Ziding Feng; Ayumu Taguchi; Samir M Hanash
Journal:  J Natl Cancer Inst       Date:  2017-04-01       Impact factor: 13.506

7.  Multivariate normally distributed biomarkers subject to limits of detection and receiver operating characteristic curve inference.

Authors:  Neil J Perkins; Enrique F Schisterman; Albert Vexler
Journal:  Acad Radiol       Date:  2013-07       Impact factor: 3.173

8.  Increased CA 19-9 level in patients without malignant disease.

Authors:  Hye-Ryoun Kim; Chang-Hyun Lee; Young Whan Kim; Sung Koo Han; Young-Soo Shim; Jae-Joon Yim
Journal:  Clin Chem Lab Med       Date:  2009       Impact factor: 3.694

9.  MAPRE1 as a plasma biomarker for early-stage colorectal cancer and adenomas.

Authors:  Ayumu Taguchi; Jung-Hyun Rho; Qingxiang Yan; Yuzheng Zhang; Yang Zhao; Hanwen Xu; Satyendra Chandra Tripathi; Hong Wang; Dean E Brenner; Melanie Kucherlapati; Raju Kucherlapati; Adam T Boutin; Y Alan Wang; Ronald A DePinho; Ziding Feng; Paul D Lampe; Samir M Hanash
Journal:  Cancer Prev Res (Phila)       Date:  2015-09-04

10.  Maximum likelihood ratio tests for comparing the discriminatory ability of biomarkers subject to limit of detection.

Authors:  Albert Vexler; Aiyi Liu; Ekaterina Eliseeva; Enrique F Schisterman
Journal:  Biometrics       Date:  2007-11-19       Impact factor: 1.701

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  2 in total

1.  A family of estimators to diagnostic accuracy when candidate tests are subject to detection limits-Application to diagnosing early stage Alzheimer disease.

Authors:  Chengjie Xiong; Jingqin Luo; Folasade Agboola; Elizabeth Grant; John C Morris
Journal:  Stat Methods Med Res       Date:  2022-01-19       Impact factor: 2.494

2.  Machine learning-based genome-wide interrogation of somatic copy number aberrations in circulating tumor DNA for early detection of hepatocellular carcinoma.

Authors:  Kaishan Tao; Zhenyuan Bian; Qiong Zhang; Xu Guo; Chun Yin; Yang Wang; Kaixiang Zhou; Shaogui Wan; Meifang Shi; Dengke Bao; Chuhu Yang; Jinliang Xing
Journal:  EBioMedicine       Date:  2020-06-05       Impact factor: 8.143

  2 in total

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