Literature DB >> 28784944

A Modified Yeast-one Hybrid System for Heteromeric Protein Complex-DNA Interaction Studies.

Prateek Tripathi1, José L Pruneda-Paz2, Steve A Kay3.   

Abstract

Over the years, the yeast one-hybrid assay has proven to be an important technique for the identification and validation of physical interactions between proteins such as transcription factors (TFs) and their DNA target. The method presented here utilizes the underlying concept of the Y1H but is modified further to study and validate protein complexes binding to their target DNA. Hence, it is referred to as the modified yeast one-hybrid (Y1.5H) assay. This assay is cost effective and can be easily performed in a regular laboratory setting. Albeit using a heterologous system, the described method could be a valuable tool to test and validate the heteromeric protein complex binding to their DNA target(s) for functional genomics in any system of study, especially plant genomics.

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Year:  2017        PMID: 28784944      PMCID: PMC5612592          DOI: 10.3791/56080

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  13 in total

1.  A generic protein purification method for protein complex characterization and proteome exploration.

Authors:  G Rigaut; A Shevchenko; B Rutz; M Wilm; M Mann; B Séraphin
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

2.  Media formulations for various two-hybrid systems.

Authors:  M Saghbini; D Hoekstra; J Gautsch
Journal:  Methods Mol Biol       Date:  2001

Review 3.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

4.  Analysis of plant regulatory DNA sequences by the yeast-one-hybrid assay.

Authors:  Dierk Wanke; Klaus Harter
Journal:  Methods Mol Biol       Date:  2009

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock.

Authors:  Anne Helfer; Dmitri A Nusinow; Brenda Y Chow; Andrew R Gehrke; Martha L Bulyk; Steve A Kay
Journal:  Curr Biol       Date:  2011-01-13       Impact factor: 10.834

7.  A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Authors:  Jose L Pruneda-Paz; Ghislain Breton; Dawn H Nagel; S Earl Kang; Katia Bonaldi; Colleen J Doherty; Stephanie Ravelo; Mary Galli; Joseph R Ecker; Steve A Kay
Journal:  Cell Rep       Date:  2014-07-17       Impact factor: 9.423

8.  Identification of Arabidopsis Transcriptional Regulators by Yeast One-Hybrid Screens Using a Transcription Factor ORFeome.

Authors:  Ghislain Breton; Steve A Kay; José L Pruneda-Paz
Journal:  Methods Mol Biol       Date:  2016

9.  Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.

Authors:  Prateek Tripathi; Marcela Carvallo; Elizabeth E Hamilton; Sasha Preuss; Steve A Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-20       Impact factor: 11.205

Review 10.  Yeast one-hybrid assays: a historical and technical perspective.

Authors:  John S Reece-Hoyes; A J Marian Walhout
Journal:  Methods       Date:  2012-08-03       Impact factor: 3.608

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  1 in total

1.  Characteristics of dihydroflavonol 4-reductase gene promoters from different leaf colored Malus crabapple cultivars.

Authors:  Ji Tian; Meng-Chen Chen; Jie Zhang; Ke-Ting Li; Ting-Ting Song; Xi Zhang; Yun-Cong Yao
Journal:  Hortic Res       Date:  2017-12-13       Impact factor: 6.793

  1 in total

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