Literature DB >> 28784789

Early history of Neanderthals and Denisovans.

Alan R Rogers1, Ryan J Bohlender2, Chad D Huff2.   

Abstract

Extensive DNA sequence data have made it possible to reconstruct human evolutionary history in unprecedented detail. We introduce a method to study the past several hundred thousand years. Our results show that (i) the Neanderthal-Denisovan lineage declined to a small size just after separating from the modern lineage, (ii) Neanderthals and Denisovans separated soon thereafter, and (iii) the subsequent Neanderthal population was large and deeply subdivided. They also (iv) support previous estimates of gene flow from Neanderthals into modern Eurasians. These results suggest an archaic human diaspora early in the Middle Pleistocene.

Entities:  

Keywords:  Denisovans; Neanderthals; archaic admixture; human evolution; introgression

Mesh：

Year:  2017        PMID： 28784789      PMCID： PMC5604018          DOI： 10.1073/pnas.1706426114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  26 in total

1.  Patterns of coding variation in the complete exomes of three Neandertals.

Authors:  Sergi Castellano; Genís Parra; Federico A Sánchez-Quinto; Fernando Racimo; Martin Kuhlwilm; Martin Kircher; Susanna Sawyer; Qiaomei Fu; Anja Heinze; Birgit Nickel; Jesse Dabney; Michael Siebauer; Louise White; Hernán A Burbano; Gabriel Renaud; Udo Stenzel; Carles Lalueza-Fox; Marco de la Rasilla; Antonio Rosas; Pavao Rudan; Dejana Brajković; Željko Kucan; Ivan Gušic; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Matthias Meyer; Janet Kelso; Aida M Andrés; Svante Pääbo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

2.  A high-coverage genome sequence from an archaic Denisovan individual.

Authors:  Matthias Meyer; Martin Kircher; Marie-Theres Gansauge; Heng Li; Fernando Racimo; Swapan Mallick; Joshua G Schraiber; Flora Jay; Kay Prüfer; Cesare de Filippo; Peter H Sudmant; Can Alkan; Qiaomei Fu; Ron Do; Nadin Rohland; Arti Tandon; Michael Siebauer; Richard E Green; Katarzyna Bryc; Adrian W Briggs; Udo Stenzel; Jesse Dabney; Jay Shendure; Jacob Kitzman; Michael F Hammer; Michael V Shunkov; Anatoli P Derevianko; Nick Patterson; Aida M Andrés; Evan E Eichler; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

3.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

4.  Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania.

Authors:  David Reich; Nick Patterson; Martin Kircher; Frederick Delfin; Madhusudan R Nandineni; Irina Pugach; Albert Min-Shan Ko; Ying-Chin Ko; Timothy A Jinam; Maude E Phipps; Naruya Saitou; Andreas Wollstein; Manfred Kayser; Svante Pääbo; Mark Stoneking
Journal:  Am J Hum Genet       Date:  2011-09-22       Impact factor: 11.025

5.  Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Authors:  Matthias Meyer; Juan-Luis Arsuaga; Cesare de Filippo; Sarah Nagel; Ayinuer Aximu-Petri; Birgit Nickel; Ignacio Martínez; Ana Gracia; José María Bermúdez de Castro; Eudald Carbonell; Bence Viola; Janet Kelso; Kay Prüfer; Svante Pääbo
Journal:  Nature       Date:  2016-03-14       Impact factor: 49.962

6.  Archaic human ancestry in East Asia.

Authors:  Pontus Skoglund; Mattias Jakobsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

7.  Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins.

Authors:  Phillip Endicott; Simon Y W Ho; Chris Stringer
Journal:  J Hum Evol       Date:  2010-05-26       Impact factor: 3.895

8.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

9.  The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:  Kay Prüfer; Fernando Racimo; Nick Patterson; Flora Jay; Sriram Sankararaman; Susanna Sawyer; Anja Heinze; Gabriel Renaud; Peter H Sudmant; Cesare de Filippo; Heng Li; Swapan Mallick; Michael Dannemann; Qiaomei Fu; Martin Kircher; Martin Kuhlwilm; Michael Lachmann; Matthias Meyer; Matthias Ongyerth; Michael Siebauer; Christoph Theunert; Arti Tandon; Priya Moorjani; Joseph Pickrell; James C Mullikin; Samuel H Vohr; Richard E Green; Ines Hellmann; Philip L F Johnson; Hélène Blanche; Howard Cann; Jacob O Kitzman; Jay Shendure; Evan E Eichler; Ed S Lein; Trygve E Bakken; Liubov V Golovanova; Vladimir B Doronichev; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

10.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962
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  18 in total

1.  Impact and Evolutionary Determinants of Neanderthal Introgression on Transcriptional and Post-Transcriptional Regulation.

Authors:  Martin Silvert; Lluis Quintana-Murci; Maxime Rotival
Journal:  Am J Hum Genet       Date:  2019-05-30       Impact factor: 11.025

Review 2.  Complex Phenotypes: Mechanisms Underlying Variation in Human Stature.

Authors:  Pushpanathan Muthuirulan; Terence D Capellini
Journal:  Curr Osteoporos Rep       Date:  2019-10       Impact factor: 5.096

3.  Better support for a small effective population size of Neandertals and a long shared history of Neandertals and Denisovans.

Authors:  Fabrizio Mafessoni; Kay Prüfer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-14       Impact factor: 11.205

4.  Reply to Mafessoni and Prüfer: Inferences with and without singleton site patterns.

Authors:  Alan R Rogers; Ryan J Bohlender; Chad D Huff
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-14       Impact factor: 11.205

5.  Neanderthals and Denisovans as biological invaders.

Authors:  John Hawks
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-31       Impact factor: 11.205

Review 6.  Genetics, adaptation to environmental changes and archaic admixture in the pathogenesis of diabetes mellitus in Indigenous Australians.

Authors:  Malgorzata Monika Brzozowska; Essi Havula; Richard Benjamin Allen; Murray P Cox
Journal:  Rev Endocr Metab Disord       Date:  2019-09       Impact factor: 6.514

7.  Oxytocin and vasotocin receptor variation and the evolution of human prosociality.

Authors:  Constantina Theofanopoulou; Alejandro Andirkó; Cedric Boeckx; Erich D Jarvis
Journal:  Compr Psychoneuroendocrinol       Date:  2022-05-05

8.  Reconstructing cranial evolution in an extinct hominin.

Authors:  Karen L Baab
Journal:  Proc Biol Sci       Date:  2021-01-20       Impact factor: 5.349

9.  Living on the edge: Was demographic weakness the cause of Neanderthal demise?

Authors:  Anna Degioanni; Christophe Bonenfant; Sandrine Cabut; Silvana Condemi
Journal:  PLoS One       Date:  2019-05-29       Impact factor: 3.240

10.  The Middle Pleistocene (MIS 12) human dental remains from Fontana Ranuccio (Latium) and Visogliano (Friuli-Venezia Giulia), Italy. A comparative high resolution endostructural assessment.

Authors:  Clément Zanolli; María Martinón-Torres; Federico Bernardini; Giovanni Boschian; Alfredo Coppa; Diego Dreossi; Lucia Mancini; Marina Martínez de Pinillos; Laura Martín-Francés; José María Bermúdez de Castro; Carlo Tozzi; Claudio Tuniz; Roberto Macchiarelli
Journal:  PLoS One       Date:  2018-10-03       Impact factor: 3.240
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