Literature DB >> 28782682

Deconstructing multivariate decoding for the study of brain function.

Martin N Hebart1, Chris I Baker2.   

Abstract

Multivariate decoding methods were developed originally as tools to enable accurate predictions in real-world applications. The realization that these methods can also be employed to study brain function has led to their widespread adoption in the neurosciences. However, prior to the rise of multivariate decoding, the study of brain function was firmly embedded in a statistical philosophy grounded on univariate methods of data analysis. In this way, multivariate decoding for brain interpretation grew out of two established frameworks: multivariate decoding for predictions in real-world applications, and classical univariate analysis based on the study and interpretation of brain activation. We argue that this led to two confusions, one reflecting a mixture of multivariate decoding for prediction or interpretation, and the other a mixture of the conceptual and statistical philosophies underlying multivariate decoding and classical univariate analysis. Here we attempt to systematically disambiguate multivariate decoding for the study of brain function from the frameworks it grew out of. After elaborating these confusions and their consequences, we describe six, often unappreciated, differences between classical univariate analysis and multivariate decoding. We then focus on how the common interpretation of what is signal and noise changes in multivariate decoding. Finally, we use four examples to illustrate where these confusions may impact the interpretation of neuroimaging data. We conclude with a discussion of potential strategies to help resolve these confusions in interpreting multivariate decoding results, including the potential departure from multivariate decoding methods for the study of brain function.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Decoding; Encoding; Multivariate analysis; Multivariate decoding; Multivariate pattern analysis; Prediction; fMRI

Mesh:

Year:  2017        PMID: 28782682      PMCID: PMC5797513          DOI: 10.1016/j.neuroimage.2017.08.005

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  91 in total

1.  Classifying spatial patterns of brain activity with machine learning methods: application to lie detection.

Authors:  C Davatzikos; K Ruparel; Y Fan; D G Shen; M Acharyya; J W Loughead; R C Gur; D D Langleben
Journal:  Neuroimage       Date:  2005-10-05       Impact factor: 6.556

Review 2.  Extracting information from neuronal populations: information theory and decoding approaches.

Authors:  Rodrigo Quian Quiroga; Stefano Panzeri
Journal:  Nat Rev Neurosci       Date:  2009-03       Impact factor: 34.870

3.  On the interpretation of weight vectors of linear models in multivariate neuroimaging.

Authors:  Stefan Haufe; Frank Meinecke; Kai Görgen; Sven Dähne; John-Dylan Haynes; Benjamin Blankertz; Felix Bießmann
Journal:  Neuroimage       Date:  2013-11-15       Impact factor: 6.556

4.  Causal interpretation rules for encoding and decoding models in neuroimaging.

Authors:  Sebastian Weichwald; Timm Meyer; Ozan Özdenizci; Bernhard Schölkopf; Tonio Ball; Moritz Grosse-Wentrup
Journal:  Neuroimage       Date:  2015-01-24       Impact factor: 6.556

5.  Reading hidden intentions in the human brain.

Authors:  John-Dylan Haynes; Katsuyuki Sakai; Geraint Rees; Sam Gilbert; Chris Frith; Richard E Passingham
Journal:  Curr Biol       Date:  2007-02-08       Impact factor: 10.834

6.  The coding of color, motion, and their conjunction in the human visual cortex.

Authors:  Kiley Seymour; Colin W G Clifford; Nikos K Logothetis; Andreas Bartels
Journal:  Curr Biol       Date:  2009-01-29       Impact factor: 10.834

7.  Comparing the similarity and spatial structure of neural representations: a pattern-component model.

Authors:  Jörn Diedrichsen; Gerard R Ridgway; Karl J Friston; Tobias Wiestler
Journal:  Neuroimage       Date:  2011-01-20       Impact factor: 6.556

8.  Decoding reveals the contents of visual working memory in early visual areas.

Authors:  Stephenie A Harrison; Frank Tong
Journal:  Nature       Date:  2009-02-18       Impact factor: 49.962

9.  Neural mechanisms of rapid natural scene categorization in human visual cortex.

Authors:  Marius V Peelen; Li Fei-Fei; Sabine Kastner
Journal:  Nature       Date:  2009-06-07       Impact factor: 49.962

10.  Characterizing the dynamics of mental representations: the temporal generalization method.

Authors:  J-R King; S Dehaene
Journal:  Trends Cogn Sci       Date:  2014-03-02       Impact factor: 20.229

View more
  68 in total

1.  Decoding vibrotactile choice independent of stimulus order and saccade selection during sequential comparisons.

Authors:  Yuan-Hao Wu; Lisa A Velenosi; Pia Schröder; Simon Ludwig; Felix Blankenburg
Journal:  Hum Brain Mapp       Date:  2018-12-18       Impact factor: 5.038

2.  Atlas-Based Classification Algorithms for Identification of Informative Brain Regions in fMRI Data.

Authors:  Juan E Arco; Paloma Díaz-Gutiérrez; Javier Ramírez; María Ruz
Journal:  Neuroinformatics       Date:  2020-04

3.  Lexical Information Guides Retuning of Neural Patterns in Perceptual Learning for Speech.

Authors:  Sahil Luthra; João M Correia; Dave F Kleinschmidt; Laura Mesite; Emily B Myers
Journal:  J Cogn Neurosci       Date:  2020-07-14       Impact factor: 3.225

4.  Toward an Individualized Neural Assessment of Receptive Language in Children.

Authors:  Selene Petit; Nicholas A Badcock; Tijl Grootswagers; Anina N Rich; Jon Brock; Lyndsey Nickels; Denise Moerel; Nadene Dermody; Shu Yau; Elaine Schmidt; Alexandra Woolgar
Journal:  J Speech Lang Hear Res       Date:  2020-07-08       Impact factor: 2.297

5.  Shared Neural Representations of Cognitive Conflict and Negative Affect in the Medial Frontal Cortex.

Authors:  Luc Vermeylen; David Wisniewski; Carlos González-García; Vincent Hoofs; Wim Notebaert; Senne Braem
Journal:  J Neurosci       Date:  2020-10-13       Impact factor: 6.167

Review 6.  Interpreting encoding and decoding models.

Authors:  Nikolaus Kriegeskorte; Pamela K Douglas
Journal:  Curr Opin Neurobiol       Date:  2019-04-28       Impact factor: 6.627

7.  The Influence of Object-Color Knowledge on Emerging Object Representations in the Brain.

Authors:  Lina Teichmann; Genevieve L Quek; Amanda K Robinson; Tijl Grootswagers; Thomas A Carlson; Anina N Rich
Journal:  J Neurosci       Date:  2020-07-23       Impact factor: 6.167

8.  Preserved sensory processing but hampered conflict detection when stimulus input is task-irrelevant.

Authors:  Tristan Bekinschtein; Simon van Gaal; Stijn Adriaan Nuiten; Andrés Canales-Johnson; Lola Beerendonk; Nutsa Nanuashvili; Johannes Jacobus Fahrenfort
Journal:  Elife       Date:  2021-06-14       Impact factor: 8.140

9.  Right Temporoparietal Junction Underlies Avoidance of Moral Transgression in Autism Spectrum Disorder.

Authors:  Yang Hu; Alessandra M Pereira; Xiaoxue Gao; Brunno M Campos; Edmund Derrington; Brice Corgnet; Xiaolin Zhou; Fernando Cendes; Jean-Claude Dreher
Journal:  J Neurosci       Date:  2020-11-06       Impact factor: 6.167

10.  Decreased Alertness Reconfigures Cognitive Control Networks.

Authors:  Andrés Canales-Johnson; Lola Beerendonk; Salome Blain; Shin Kitaoka; Alejandro Ezquerro-Nassar; Stijn Nuiten; Johannes Fahrenfort; Simon van Gaal; Tristan A Bekinschtein
Journal:  J Neurosci       Date:  2020-08-12       Impact factor: 6.167

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.