| Literature DB >> 28775892 |
Rui-Fang Ke1, Shi-Cheng Xu1, Ping Song2, Shi-Hao Deng1, Xin-Hua Ma1, Xin-Zhou Yang1.
Abstract
The title compound [systematic name: (4bS)-4-hy-droxy-2-isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a-hexa-hydro-phenanthrene-3,9-dione], C20H26O3, is an abietane-type diterpene, which was isolated from Taxodium ascendens (B.). In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming supra-molecular chains propagating along the [001] direction.Entities:
Keywords: Taxodium ascendens; crystal structure; taxodione
Year: 2017 PMID: 28775892 PMCID: PMC5499300 DOI: 10.1107/S205698901700946X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing 50% probability displacement ellipsoids. A packing diagram of the title compound, with hydrogen bonds shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O3 | 0.82 | 2.06 | 2.554 (2) | 118 |
| C11—H11⋯O3i | 0.93 | 2.63 | 3.502 (2) | 156 |
Symmetry code: (i) .
Figure 2The packing of the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C20H26O3 |
|
| 314.41 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 9.5008 (15), 13.220 (2), 13.584 (2) |
|
| 1706.1 (5) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.08 |
| Crystal size (mm) | 0.30 × 0.20 × 0.20 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | – |
| No. of measured, independent and observed [ | 12903, 3355, 3111 |
|
| 0.046 |
| (sin θ/λ)max (Å−1) | 0.617 |
| Refinement | |
|
| 0.034, 0.088, 1.05 |
| No. of reflections | 3355 |
| No. of parameters | 215 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.17, −0.20 |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸) and SHELXL2014 (Sheldrick, 2015 ▸).
| C20H26O3 | |
| Mo | |
| Orthorhombic, | Cell parameters from 6770 reflections |
| θ = 2.6–30.9° | |
| µ = 0.08 mm−1 | |
| Prism, yellow | |
| 0.30 × 0.20 × 0.20 mm | |
| Bruker APEXII CCD diffractometer | |
| φ and ω scans | θmax = 26.0°, θmin = 2.2° |
| 12903 measured reflections | |
| 3355 independent reflections | |
| 3111 reflections with |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.17 e Å−3 | |
| 3355 reflections | Δρmin = −0.20 e Å−3 |
| 215 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.062 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O3 | 0.17963 (19) | 0.52283 (12) | 1.10546 (10) | 0.0539 (4) | |
| O1 | 0.2584 (2) | 0.83099 (11) | 0.64710 (11) | 0.0647 (5) | |
| C5 | 0.2103 (3) | 1.03778 (15) | 0.89721 (18) | 0.0541 (6) | |
| H5A | 0.2972 | 1.0319 | 0.9343 | 0.065* | |
| H5B | 0.1947 | 1.1090 | 0.8841 | 0.065* | |
| C4 | 0.0911 (3) | 0.99858 (15) | 0.95940 (19) | 0.0583 (7) | |
| H4A | 0.0031 | 1.0060 | 0.9238 | 0.070* | |
| H4B | 0.0847 | 1.0380 | 1.0194 | 0.070* | |
| C3 | 0.1139 (3) | 0.88729 (15) | 0.98514 (16) | 0.0484 (5) | |
| H3A | 0.0359 | 0.8639 | 1.0252 | 0.058* | |
| H3B | 0.1992 | 0.8808 | 1.0238 | 0.058* | |
| C2 | 0.12591 (19) | 0.81999 (13) | 0.89322 (13) | 0.0326 (4) | |
| C13 | 0.1741 (2) | 0.71188 (13) | 0.91885 (13) | 0.0311 (4) | |
| C12 | 0.2329 (2) | 0.65054 (12) | 0.83944 (13) | 0.0322 (4) | |
| C17 | 0.2566 (2) | 0.54251 (13) | 0.85234 (14) | 0.0363 (4) | |
| H17 | 0.2872 | 0.5051 | 0.7985 | 0.044* | |
| C16 | 0.2365 (2) | 0.49443 (13) | 0.93772 (13) | 0.0349 (4) | |
| C18 | 0.2533 (2) | 0.38153 (13) | 0.95424 (15) | 0.0409 (5) | |
| H18 | 0.3060 | 0.3724 | 1.0156 | 0.049* | |
| C19 | 0.3352 (3) | 0.32924 (15) | 0.87312 (19) | 0.0558 (6) | |
| H19A | 0.4261 | 0.3603 | 0.8666 | 0.084* | |
| H19B | 0.2848 | 0.3353 | 0.8121 | 0.084* | |
| H19C | 0.3465 | 0.2590 | 0.8892 | 0.084* | |
| C20 | 0.1092 (3) | 0.33257 (16) | 0.96823 (19) | 0.0541 (6) | |
| H20A | 0.0561 | 0.3382 | 0.9084 | 0.081* | |
| H20B | 0.0599 | 0.3663 | 1.0205 | 0.081* | |
| H20C | 0.1210 | 0.2625 | 0.9847 | 0.081* | |
| C14 | 0.1554 (2) | 0.66396 (14) | 1.00567 (14) | 0.0358 (4) | |
| O2 | 0.10090 (19) | 0.70666 (12) | 1.08780 (10) | 0.0547 (4) | |
| H2 | 0.0925 | 0.6635 | 1.1307 | 0.082* | |
| C15 | 0.1912 (2) | 0.55593 (14) | 1.02095 (14) | 0.0369 (4) | |
| C6 | 0.2279 (2) | 0.98258 (13) | 0.79930 (15) | 0.0403 (5) | |
| C8 | 0.1081 (3) | 1.01246 (17) | 0.72952 (19) | 0.0573 (6) | |
| H8A | 0.1165 | 0.9751 | 0.6692 | 0.086* | |
| H8B | 0.1135 | 1.0836 | 0.7158 | 0.086* | |
| H8C | 0.0193 | 0.9974 | 0.7599 | 0.086* | |
| C9 | 0.3670 (3) | 1.01768 (17) | 0.7533 (2) | 0.0574 (6) | |
| H9A | 0.4438 | 0.9988 | 0.7954 | 0.086* | |
| H9B | 0.3657 | 1.0899 | 0.7456 | 0.086* | |
| H9C | 0.3786 | 0.9864 | 0.6900 | 0.086* | |
| C1 | 0.2375 (2) | 0.86693 (12) | 0.82138 (13) | 0.0320 (4) | |
| H1 | 0.3273 | 0.8591 | 0.8561 | 0.038* | |
| C10 | 0.2524 (2) | 0.80036 (13) | 0.73123 (13) | 0.0387 (4) | |
| C11 | 0.2643 (2) | 0.69172 (13) | 0.75146 (13) | 0.0389 (4) | |
| H11 | 0.2949 | 0.6493 | 0.7012 | 0.047* | |
| C7 | −0.0201 (2) | 0.80774 (16) | 0.84503 (18) | 0.0471 (5) | |
| H7A | −0.0805 | 0.7701 | 0.8882 | 0.071* | |
| H7B | −0.0104 | 0.7723 | 0.7837 | 0.071* | |
| H7C | −0.0602 | 0.8733 | 0.8332 | 0.071* |
| O3 | 0.0756 (11) | 0.0484 (8) | 0.0378 (8) | −0.0038 (8) | 0.0044 (8) | 0.0116 (7) |
| O1 | 0.1165 (15) | 0.0410 (7) | 0.0366 (7) | 0.0117 (10) | 0.0151 (10) | 0.0065 (6) |
| C5 | 0.0723 (16) | 0.0303 (9) | 0.0596 (13) | −0.0035 (10) | 0.0031 (12) | −0.0107 (9) |
| C4 | 0.0842 (18) | 0.0339 (11) | 0.0567 (13) | 0.0080 (11) | 0.0172 (13) | −0.0137 (10) |
| C3 | 0.0671 (15) | 0.0355 (10) | 0.0427 (11) | 0.0047 (10) | 0.0112 (11) | −0.0102 (9) |
| C2 | 0.0355 (9) | 0.0279 (8) | 0.0345 (9) | 0.0024 (7) | 0.0033 (8) | −0.0043 (7) |
| C13 | 0.0319 (9) | 0.0296 (8) | 0.0319 (9) | 0.0002 (7) | 0.0010 (7) | −0.0032 (7) |
| C12 | 0.0353 (9) | 0.0287 (8) | 0.0325 (8) | 0.0020 (7) | 0.0003 (7) | −0.0013 (7) |
| C17 | 0.0443 (10) | 0.0285 (8) | 0.0361 (9) | 0.0015 (8) | 0.0006 (9) | −0.0037 (7) |
| C16 | 0.0360 (10) | 0.0288 (8) | 0.0398 (9) | −0.0019 (7) | −0.0065 (8) | 0.0030 (7) |
| C18 | 0.0463 (12) | 0.0293 (8) | 0.0471 (10) | −0.0021 (9) | −0.0104 (10) | 0.0079 (8) |
| C19 | 0.0617 (14) | 0.0276 (9) | 0.0780 (16) | 0.0029 (9) | 0.0017 (12) | −0.0003 (10) |
| C20 | 0.0544 (14) | 0.0397 (11) | 0.0681 (14) | −0.0118 (10) | −0.0038 (11) | 0.0094 (11) |
| C14 | 0.0364 (10) | 0.0369 (9) | 0.0341 (9) | −0.0001 (8) | 0.0029 (7) | −0.0025 (7) |
| O2 | 0.0766 (12) | 0.0513 (9) | 0.0364 (8) | 0.0070 (8) | 0.0202 (8) | 0.0013 (7) |
| C15 | 0.0382 (10) | 0.0385 (9) | 0.0340 (10) | −0.0063 (8) | −0.0013 (8) | 0.0053 (8) |
| C6 | 0.0446 (11) | 0.0264 (8) | 0.0499 (11) | 0.0006 (8) | 0.0003 (9) | 0.0003 (8) |
| C8 | 0.0666 (15) | 0.0361 (10) | 0.0693 (15) | 0.0112 (10) | −0.0097 (12) | 0.0083 (10) |
| C9 | 0.0596 (15) | 0.0385 (11) | 0.0740 (15) | −0.0057 (10) | 0.0103 (13) | 0.0092 (11) |
| C1 | 0.0332 (9) | 0.0260 (8) | 0.0367 (9) | 0.0030 (7) | −0.0013 (8) | −0.0014 (7) |
| C10 | 0.0497 (11) | 0.0314 (8) | 0.0349 (9) | 0.0050 (9) | 0.0069 (9) | 0.0023 (7) |
| C11 | 0.0549 (12) | 0.0294 (8) | 0.0325 (8) | 0.0058 (8) | 0.0059 (9) | −0.0046 (7) |
| C7 | 0.0344 (10) | 0.0387 (10) | 0.0683 (14) | 0.0030 (8) | −0.0027 (10) | 0.0005 (10) |
| O3—C15 | 1.233 (2) | C19—H19A | 0.9600 |
| O1—C10 | 1.214 (2) | C19—H19B | 0.9600 |
| C5—C4 | 1.506 (4) | C19—H19C | 0.9600 |
| C5—C6 | 1.526 (3) | C20—H20A | 0.9600 |
| C5—H5A | 0.9700 | C20—H20B | 0.9600 |
| C5—H5B | 0.9700 | C20—H20C | 0.9600 |
| C4—C3 | 1.528 (3) | C14—O2 | 1.353 (2) |
| C4—H4A | 0.9700 | C14—C15 | 1.483 (3) |
| C4—H4B | 0.9700 | O2—H2 | 0.8200 |
| C3—C2 | 1.538 (2) | C6—C8 | 1.533 (3) |
| C3—H3A | 0.9700 | C6—C9 | 1.534 (3) |
| C3—H3B | 0.9700 | C6—C1 | 1.561 (2) |
| C2—C13 | 1.541 (2) | C8—H8A | 0.9600 |
| C2—C7 | 1.542 (3) | C8—H8B | 0.9600 |
| C2—C1 | 1.569 (3) | C8—H8C | 0.9600 |
| C13—C14 | 1.350 (3) | C9—H9A | 0.9600 |
| C13—C12 | 1.461 (2) | C9—H9B | 0.9600 |
| C12—C11 | 1.347 (2) | C9—H9C | 0.9600 |
| C12—C17 | 1.456 (2) | C1—C10 | 1.515 (2) |
| C17—C16 | 1.336 (3) | C1—H1 | 0.9800 |
| C17—H17 | 0.9300 | C10—C11 | 1.467 (2) |
| C16—C15 | 1.458 (3) | C11—H11 | 0.9300 |
| C16—C18 | 1.518 (2) | C7—H7A | 0.9600 |
| C18—C19 | 1.515 (3) | C7—H7B | 0.9600 |
| C18—C20 | 1.527 (3) | C7—H7C | 0.9600 |
| C18—H18 | 0.9800 | ||
| C4—C5—C6 | 114.00 (18) | C18—C20—H20B | 109.5 |
| C4—C5—H5A | 108.8 | H20A—C20—H20B | 109.5 |
| C6—C5—H5A | 108.8 | C18—C20—H20C | 109.5 |
| C4—C5—H5B | 108.8 | H20A—C20—H20C | 109.5 |
| C6—C5—H5B | 108.8 | H20B—C20—H20C | 109.5 |
| H5A—C5—H5B | 107.6 | C13—C14—O2 | 125.06 (17) |
| C5—C4—C3 | 110.7 (2) | C13—C14—C15 | 122.97 (17) |
| C5—C4—H4A | 109.5 | O2—C14—C15 | 111.96 (16) |
| C3—C4—H4A | 109.5 | C14—O2—H2 | 109.5 |
| C5—C4—H4B | 109.5 | O3—C15—C16 | 123.39 (18) |
| C3—C4—H4B | 109.5 | O3—C15—C14 | 116.86 (18) |
| H4A—C4—H4B | 108.1 | C16—C15—C14 | 119.75 (16) |
| C4—C3—C2 | 112.45 (18) | C5—C6—C8 | 109.54 (18) |
| C4—C3—H3A | 109.1 | C5—C6—C9 | 107.74 (18) |
| C2—C3—H3A | 109.1 | C8—C6—C9 | 108.04 (18) |
| C4—C3—H3B | 109.1 | C5—C6—C1 | 107.90 (16) |
| C2—C3—H3B | 109.1 | C8—C6—C1 | 114.51 (16) |
| H3A—C3—H3B | 107.8 | C9—C6—C1 | 108.91 (16) |
| C3—C2—C13 | 112.04 (15) | C6—C8—H8A | 109.5 |
| C3—C2—C7 | 109.80 (17) | C6—C8—H8B | 109.5 |
| C13—C2—C7 | 105.41 (15) | H8A—C8—H8B | 109.5 |
| C3—C2—C1 | 109.04 (15) | C6—C8—H8C | 109.5 |
| C13—C2—C1 | 107.86 (14) | H8A—C8—H8C | 109.5 |
| C7—C2—C1 | 112.67 (15) | H8B—C8—H8C | 109.5 |
| C14—C13—C12 | 115.76 (15) | C6—C9—H9A | 109.5 |
| C14—C13—C2 | 126.42 (16) | C6—C9—H9B | 109.5 |
| C12—C13—C2 | 117.50 (15) | H9A—C9—H9B | 109.5 |
| C11—C12—C17 | 117.98 (16) | C6—C9—H9C | 109.5 |
| C11—C12—C13 | 121.04 (15) | H9A—C9—H9C | 109.5 |
| C17—C12—C13 | 120.97 (15) | H9B—C9—H9C | 109.5 |
| C16—C17—C12 | 123.29 (17) | C10—C1—C6 | 114.79 (15) |
| C16—C17—H17 | 118.4 | C10—C1—C2 | 109.64 (14) |
| C12—C17—H17 | 118.4 | C6—C1—C2 | 117.86 (15) |
| C17—C16—C15 | 116.75 (16) | C10—C1—H1 | 104.3 |
| C17—C16—C18 | 125.52 (17) | C6—C1—H1 | 104.3 |
| C15—C16—C18 | 117.70 (16) | C2—C1—H1 | 104.3 |
| C19—C18—C16 | 113.28 (17) | O1—C10—C11 | 119.97 (17) |
| C19—C18—C20 | 110.95 (18) | O1—C10—C1 | 124.87 (17) |
| C16—C18—C20 | 109.92 (17) | C11—C10—C1 | 115.13 (15) |
| C19—C18—H18 | 107.5 | C12—C11—C10 | 123.03 (16) |
| C16—C18—H18 | 107.5 | C12—C11—H11 | 118.5 |
| C20—C18—H18 | 107.5 | C10—C11—H11 | 118.5 |
| C18—C19—H19A | 109.5 | C2—C7—H7A | 109.5 |
| C18—C19—H19B | 109.5 | C2—C7—H7B | 109.5 |
| H19A—C19—H19B | 109.5 | H7A—C7—H7B | 109.5 |
| C18—C19—H19C | 109.5 | C2—C7—H7C | 109.5 |
| H19A—C19—H19C | 109.5 | H7A—C7—H7C | 109.5 |
| H19B—C19—H19C | 109.5 | H7B—C7—H7C | 109.5 |
| C18—C20—H20A | 109.5 | ||
| C6—C5—C4—C3 | 60.6 (3) | C17—C16—C15—C14 | 6.4 (3) |
| C5—C4—C3—C2 | −58.9 (3) | C18—C16—C15—C14 | −172.15 (17) |
| C4—C3—C2—C13 | 170.16 (19) | C13—C14—C15—O3 | 174.55 (19) |
| C4—C3—C2—C7 | −73.1 (2) | O2—C14—C15—O3 | −6.4 (3) |
| C4—C3—C2—C1 | 50.8 (2) | C13—C14—C15—C16 | −5.8 (3) |
| C3—C2—C13—C14 | 26.0 (3) | O2—C14—C15—C16 | 173.20 (18) |
| C7—C2—C13—C14 | −93.4 (2) | C4—C5—C6—C8 | 72.5 (2) |
| C1—C2—C13—C14 | 146.02 (18) | C4—C5—C6—C9 | −170.2 (2) |
| C3—C2—C13—C12 | −160.72 (17) | C4—C5—C6—C1 | −52.8 (3) |
| C7—C2—C13—C12 | 79.9 (2) | C5—C6—C1—C10 | 178.84 (18) |
| C1—C2—C13—C12 | −40.7 (2) | C8—C6—C1—C10 | 56.6 (2) |
| C14—C13—C12—C11 | −175.83 (19) | C9—C6—C1—C10 | −64.5 (2) |
| C2—C13—C12—C11 | 10.2 (3) | C5—C6—C1—C2 | 47.3 (2) |
| C14—C13—C12—C17 | 5.5 (3) | C8—C6—C1—C2 | −74.9 (2) |
| C2—C13—C12—C17 | −168.47 (17) | C9—C6—C1—C2 | 164.01 (18) |
| C11—C12—C17—C16 | 176.3 (2) | C3—C2—C1—C10 | 178.98 (16) |
| C13—C12—C17—C16 | −5.0 (3) | C13—C2—C1—C10 | 57.08 (18) |
| C12—C17—C16—C15 | −1.2 (3) | C7—C2—C1—C10 | −58.84 (19) |
| C12—C17—C16—C18 | 177.20 (19) | C3—C2—C1—C6 | −47.2 (2) |
| C17—C16—C18—C19 | 16.5 (3) | C13—C2—C1—C6 | −169.12 (16) |
| C15—C16—C18—C19 | −165.18 (19) | C7—C2—C1—C6 | 75.0 (2) |
| C17—C16—C18—C20 | −108.3 (2) | C6—C1—C10—O1 | 0.8 (3) |
| C15—C16—C18—C20 | 70.1 (2) | C2—C1—C10—O1 | 136.1 (2) |
| C12—C13—C14—O2 | −179.14 (19) | C6—C1—C10—C11 | 178.87 (18) |
| C2—C13—C14—O2 | −5.7 (3) | C2—C1—C10—C11 | −45.8 (2) |
| C12—C13—C14—C15 | −0.3 (3) | C17—C12—C11—C10 | −176.54 (19) |
| C2—C13—C14—C15 | 173.14 (18) | C13—C12—C11—C10 | 4.8 (3) |
| C17—C16—C15—O3 | −174.0 (2) | O1—C10—C11—C12 | −167.3 (2) |
| C18—C16—C15—O3 | 7.5 (3) | C1—C10—C11—C12 | 14.5 (3) |
| H··· | ||||
| O2—H2···O3 | 0.82 | 2.06 | 2.554 (2) | 118 |
| C11—H11···O3i | 0.93 | 2.63 | 3.502 (2) | 156 |