| Literature DB >> 28769630 |
Jin-Hua Yang1, Masanori J Toda2, Awit Suwito3, Rosli Hashim4, Jian-Jun Gao1.
Abstract
The genus Dichaetophora Duda comprises 61 described species classified into four species groups: agbo, tenuicauda, acutissima and sinensis. This genus is distributed exclusively in the Old World, and is rich in species in the tropical and subtropical areas of the Oriental, Australasian, and Afrotropical regions. In this paper, a new species group, the trilobita group, is established for six new species discovered from the Oriental region. The delimitation of these species is firstly performed in light of morphology and further with the aid of DNA sequences of the mitochondrial COI and COII (cytochrome c oxydase, subunits I and II, respectively) genes, considering also their respective geographical origins. Then, the new species (trilobita Yang & Gao, sp. n., heterochroma Yang & Gao, sp. n., flatosternata Yang & Gao, sp. n., borneoensis Yang & Gao, sp. n., javaensis Yang & Gao, sp. n., and sumatraensis Yang & Gao, sp. n.) are described, and a key, based on not only morphological but also molecular information, is provided.Entities:
Keywords: DNA barcoding; geographical isolation; mitochondrial DNA; taxonomy
Year: 2017 PMID: 28769630 PMCID: PMC5523170 DOI: 10.3897/zookeys.665.11609
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Summary of new species and specimens of employed in the present study.
| Code of morpho-species | Formal name | Voucher # a | Distribution / collection site | Collection date |
|---|---|---|---|---|
| sp.K1 |
| #03876 (♂) | Park Headquarters, Mt. Kinabalu, Sabah, Malaysia | 11.iii.2008 |
| # | Ulu Gombak, Selangor, Malaysia | 8.xii.2013 | ||
| #03882 (♀) | Poring, Mt. Kinabalu, Sabah, Malaysia | 20.iii.2008 | ||
| unnumbered (1♂, 1♀) | Kubah, Sarawak, Malaysia | 19.i.1999 | ||
| sp. |
| # | Poring, Mt. Kinabalu, Sabah, Malaysia | 20.iii.2008 |
| #03883 (♀) | Poring, Mt. Kinabalu, Sabah, Malaysia | 13.iii.2008 | ||
| #03884–6 (1♂, 2♀) | Ulu Senagang, Crocker Range, Sabah, Malaysia | 18.x.1999 | ||
| unnumbered (1♂) | Poring, Mt. Kinabalu, Sabah, Malaysia | 19.iii.2008 | ||
| unnumbered (1♂) | Poring, Mt. Kinabalu, Sabah, Malaysia | 3.x.1999 | ||
| unnumbered (3♀) | Mahua, Crocker Range, Sabah, Malaysia | 14.x.1999 | ||
| sp. |
| #04171–8 (6♂, 2♀) | Guanlei, Xishuangbanna Nature Reserve, Yunnan, China | 14–15.x.2012 |
| sp.K3 |
| #03893–4 (♀) | Park Headquarters, Mt. Kinabalu, Sabah, Malaysia | 11.iii.2008 |
| # | Park Headquarters, Mt. Kinabalu, Sabah, Malaysia | 16.viii.2011 | ||
| #03896 (♂) | Park Headquarters, Mt. Kinabalu, Sabah, Malaysia | 17.viii.2011 | ||
| unnumbered (8♂, 4♀) | Park Headquarters, Mt. Kinabalu, Sabah, Malaysia | 2.i.1999 | ||
| unnumbered (1♂) | Poring, Mt. Kinabalu, Sabah, Malaysia | 28.xii.1998 | ||
| unnumbered (1♂) | Mahua, Crocker Range, Sabah, Malaysia | 14.x.1999 | ||
|
| #03887–89 (♀) | Cikaniki, Mt. Halimun, West Java, Indonesia | 6.xi.2009 | |
| # | Cikaniki, Mt. Halimun, West Java, Indonesia | 7.xi.2009 | ||
| unnumbered (1♀) | Cikaniki, Mt. Halimun, West Java, Indonesia | 10.xi.2009 | ||
| unnumbered (1♂) | Cibodas, West Java, Indonesia | 16.xi.2013 | ||
| unnumbered (1♂) | Mt. Patuha, Sugihmukti, West Java, Indonesia | 13.x.2004 | ||
|
| # | Mt. Kerinci, Jambi, Sumatra, Indonesia | 7.x.2004 | |
| unnumbered (1♀) | Mt. Kerinci, Jambi, Sumatra, Indonesia | 6.x.2004 |
a Numbers in bold indicate holotypes of new species.
Primer sequences for PCR/sequencing.
| Target region | Primer name | Primer sequence (5’–3’) | Reference |
|---|---|---|---|
|
| LCO1490 | GGTCAACAAATCATAAAGATATTGG |
|
| HCO2198 | TAAACTTCAGGGTGACCAAAAAATCA | ditto | |
|
|
| ATGGCAGATTAGTGCAATGG |
|
|
| GTTTAAGAGACCAGTACTTG | Ditto |
Figure 1.Geographical distribution of the species group. See the text for the detailed information of the collection sites on the map.
Models selected for sequence subsets a.
| Gene | Data set | Model selected |
|
|
|
|
|
|---|---|---|---|---|---|---|---|
|
| whole |
| 4417.9362 | -1962.0299 | n/a | 0.2057 | 2.1514 |
|
|
| 2057.0568 | -823.9557 | n/a | 0.0500 | 18.7827 | |
|
|
| 2322.3495 | -967.9958 | n/a | 1.0658 | 3.3825 | |
|
| whole |
| 4745.1717 | -2118.2231 | n/a | 0.1231 | 4.6468 |
|
|
| 2250.9406 | -881.6321 | n/a | 0.0500 | 4.4687 | |
|
|
| 2525.5613 | -1037.0171 | n/a | 0.9274 | 9.6084 |
a Abbreviations: CP1+2, codon positions 1 plus 2; CP3, condon position 3; GTR, general time reversible; G, discrete Gamma distribution; K2, Kimura 2-parameter; T92, Tamura 3-parameter; BIC score, Bayesian Information Criterion score; lnL, maximum likelihood value; Invariant, estimated fraction of invariant sites; Gamma, gamma shape parameter; , estimated value of transition/transversion bias.
Figure 2.Bayeisan trees deduced with (left) and (right) gene sequences. Label of each operational taxonomic unit (OUT) is given in the format of “voucher number (sex)”. Numbers beside nodes are posterior probabilities (when ≥ 0.90). Bold voucher numbers indicate holotype specimens.
Summary of intra- and interspecific p-distances.
| Species | Intraspecific mean distance (± | Interspecific mean distance ( | ||||||
|---|---|---|---|---|---|---|---|---|
|
|
| 1 | 2 | 3 | 4 | 5 | 6 | |
| 1. | 0.0078 ± 0.0028 | 0.0098 ± 0.0033 | 0.0112 / 0.0117 | 0.0101 / 0.0098 | 0.0127 / 0.0128 | 0.0122 / 0.0115 | 0.0123 / 0.0114 | |
| 2. | 0.0076 ± 0.0026 | 0.0044 ± 0.0018 | 0.1123 / 0.1054 | 0.0082 / 0.0076 | 0.0128 / 0.0103 | 0.0114 / 0.0104 | 0.0125 / 0.0114 | |
| 3. | 0.0041 ± 0.0017 | 0.0111 ± 0.0021 | 0.1105 / 0.1148 | 0.0573 / 0.0707 | 0.0128 / 0.0112 | 0.0127 / 0.0110 | 0.0123 / 0.0106 | |
| 4. | 0.0063 ± 0.0024 | 0.0007 ± 0.0007 | 0.1256 / 0.1273 | 0.1412 / 0.1159 | 0.1448 / 0.1355 | 0.0082 / 0.0075 | 0.0085 / 0.0076 | |
| 5. | 0.0045 ± 0.0019 | 0.0044 ± 0.0020 | 0.1118 / 0.1170 | 0.1295 / 0.1136 | 0.1271 / 0.1280 | 0.0751 / 0.0607 | 0.0079 / 0.0072 | |
| 6. | 0.0185 ± 0.0065 | 0.0060 ± 0.0027 | 0.1007 / 0.1178 | 0.1184 / 0.1129 | 0.1175 / 0.1223 | 0.0713 / 0.0576 | 0.0349 / 0.0468 | |
a SE, standard error;
b Values of p-distance below diagonal, values of standard error above diagonal.
Selected diagnostic nucleotide sites for each of sp. n., sp. n., and sp. n. in the and sequences. For nonsynonymous nucleotide substitutions, corresponding amino acid status are given in parentheses. Hyphens (-) indicate missing data, and dots (.) indicate identical symbols with the first sequence (i.e., that of the specimen #03876 of sp. n.).
| Species | Voucher # | Diagnostic sites | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
| |||||||||||||||||||
| 142 | 205 | 235 | 499 | 519 | 532 | 541 | 544 | 18 | 69 | 270 | 303 | 309 | 381 | 389 | 393 | 441 | 513 | 636 | ||
|
| #03876 | T | T | T | T | C (Ala) | A | T | T | T | T | T | T | A | A | C (Thr) | T | T | G | A |
| #03877 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (.) | . | . | . | . | |
| #03878 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (.) | . | . | . | . | |
| #03882 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (.) | . | . | . | . | |
|
| #03879 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Pro) | . | . | . | . |
| #03880 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Pro) | . | . | . | . | |
| #03881 | - | - | - | - | - | - | - | - | . | . | . | . | . | . | . (Pro) | . | . | . | . | |
| #03883 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Pro) | . | . | . | . | |
|
| #04171 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . |
| #04172 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04173 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04174 | - | - | - | - | - | - | - | - | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04175 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04176 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04177 | - | - | - | - | - | - | - | - | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
| #04178 | . | . | . | . | . (.) | . | . | . | . | . | . | . | . | . | . (Ser) | . | . | . | . | |
|
| #03893 | . | . | C | C | T (Val) | T | C | C | . | . | . | . | G | . | T (Ile) | . | C | A | G |
| #03894 | . | . | C | C | T (Val) | T | C | C | . | . | . | . | G | . | T (Ile) | . | C | A | G | |
| #03895 | . | . | C | C | T (Val) | T | C | C | . | . | . | . | G | . | T (Ile) | . | C | A | G | |
| #03896 | . | . | C | C | T (Val) | T | C | C | . | . | . | . | G | . | T (Ile) | . | C | A | G | |
|
| #03887 | C | . | . | . | . (.) | . | . | . | . | C | C | C | . | G | . (.) | C | . | . | . |
| #03888 | C | . | . | . | . (.) | . | . | . | . | C | C | C | . | G | . (.) | C | . | . | . | |
| #03889 | C | . | . | . | . (.) | . | . | . | . | C | C | C | . | G | . (.) | C | . | . | . | |
| #03892 | C | . | . | - | - | - | - | - | . | C | C | C | . | G | . (.) | C | . | . | . | |
|
| #03890 | . | C | . | - | - | - | - | - | C | . | . | . | . | . | . (.) | . | . | . | . |
| #03891 | . | C | . | . | . (.) | . | . | . | C | . | . | . | . | . | . (.) | . | . | . | . | |
Figure 4.Head (anterior view), postocciput, palpus, and prementum (ventral and lateral view, respectively). A−E sp. n. (#03877) F−J sp. n. (#03879) K−O sp. n. (#04172) P−T sp. n. (#03895) U−Y sp. n. (#03892) Z−D sp. n. (#03890). Scale bars: 0.1 mm except for A, F, K, P, U, Z (0.5 mm).
Figure 5.sp. n. (A−H #03877 I−K paratype #03878). A Periphallic organs (posterior view), with red arrow indicating the median process on the caudoventral bridge of cerci B periphallic organs (posterolateral view), with red arrows indicating the prominent setae on the cercus and the anteroventral fusion of cercus (sclerotized, marginal plate) with the epandrium C surstyli (ventral view) D surstylus (inner side) E−G phallic organs (ventral, ventrolateral and lateral view, respectively) H paramedian setae (indicated with red arrows), and apical portion of paramere I, J oviscapt (lateral and ventral view, respectively) K spermathecae. Abbreviations: aed = aedeagus, aed a = aedeagal apodeme, cerc = cercus, epand = epandrium, hypd = hypandrium, pm = paramere, sur = surstylus, 10S = tenth sternite. Scale bars: 0.1 mm.
Figure 10.sp. n. (A−H #03890 I−K paratype #03891). A, B Periphallic organs (posterior and posterolateral view, respectively) C surstyli and ventral portions of cerci D tenth sternite (posteroventral view) E−G phallic organs (ventral, ventrolateral and lateral view, respectively) H distal portion of hypandrium (posteroventral view), showing the caudolateral plates not pubescent (red arrows) and the paramedian setae I, J oviscapt (lateral and ventral view, respectively) K spermatheca (lateral view). Scale bars: 0.1 mm.
Figure 3.Left lateral habitus, head and thorax (dorsal view), wing (left, ventral view), and abdomen (dorsal view). A−D sp. n. (#03877) E−G sp. n. (#03879) H−J sp. n. (#04172) K−M sp. n. (#03895) N−P sp. n. (#03892) Q−S sp. n. (#03890). Scale bars: 1.0 mm.
Figure 6.sp. n. (A−I #03879 J−L paratype #03881). A, B Periphallic organs (posterior and posterolateral view, respectively) C surstyli and cerci, with red arrow indicating the caudoventral bridge of cerci D, E tenth sternite (ventral and anterior view, respectively), with red arrows (E) indicating a pair of depressions F−H phallic organs (ventral, ventrolateral and lateral view, respectively), with red arrow (H) indicating the dorsally swollen, submedial portion of aedeagus I paramedian setae J, K oviscapt (lateral and ventral view, respectively) L spermathecae (lateral view). Scale bars: 0.1 mm.
Figure 7.sp. n. (A−I #04172 J−L paratype #04177). A, B Periphallic organs (posterior and posterolateral view, respectively) C surstyli and cerci D, E tenth sternite (ventral and anterior view, respectively) F−H phallic organs (ventral, ventrolateral and lateral view, respectively) I paramedian setae J, K oviscapt (lateral and ventral view, respectively) L spermatheca (lateral view). Scale bars: 0.1 mm.
Figure 8.sp. n. (A−G #03895 H−J paratype #03894). A, B Periphallic organs (posterior and posterolateral view, respectively) C surstyli and cerci, with red arrow indicating the median, elongated process on the caudoventral bridge of cerci D−F phallic organs (ventral, ventrolateral and lateral view, respectively) G distal portion of hypandrium (posteroventral view), showing the caudolateral plates not pubescent (red arrows) and the paramedian setae H, I oviscapt (lateral and ventral view, respectively) J spermatheca (lateral view). Scale bars: 0.1 mm.
Figure 9.sp. n. (A−G #03892 H−J paratype #03888). A, B Periphallic organs (posterior and posterolateral view, respectively) C surstyli and ventral portions of cerci D−F phallic organs (ventral, ventrolateral and lateral view, respectively) G distal portion of hypandrium (posteroventral view), showing a pair of small patches of sparse pubescence on the caudolateral plates (red arrows) and the paramedian setae H, I oviscapt (lateral and ventral view, respectively) J spermatheca (lateral view). Scale bars: 0.1 mm.
| 1 | Postocellar setae absent; ocellar plate granulose; posteromost pseudotrachea of labellum thicker than the others; mid-leg first tarsomere with one subproximal and one apical, short, blackish brown spines, and hindleg first tarsomere with one apical, short spine; prensisetae on surstylus apically blunt (Figs |
|
| – | Postocellar setae present (Fig. |
|
| 2 | Wing nearly entirely, lightly fuscous, without distinct cloud (Fig. |
|
| – | Wing largely clouded, except for central pale patch around dm-cu vein and periphery (Fig. |
|
| 3 | Dorsolateral tentorial apodemes nearly parallel in basal half but strongly divergent in distal half (Fig. |
|
| – | Dorsolateral tentorial apodemes slightly divergent in basal half but strongly divergent in distal half (Fig. |
|
| 4 | Spermathecal capsule somewhat cylindrical, apically flat; introvert 7/10 as deep as capsule height (Fig. |
|
| – | Spermathecal capsule somewhat dome-shaped, apically roundish; introvert 2/5 as deep as capsule height (Figs |
|
| 5 | Hypandrium sparsely pubescent in small, medial patch on caudolateral plate (Fig. |
|
| – | Hypandrium without pubescence on caudolateral plate (Fig. |
|