Literature DB >> 28765522

Network Inference and Maximum Entropy Estimation on Information Diagrams.

Elliot A Martin1, Jaroslav Hlinka2,3, Alexander Meinke1, Filip Děchtěrenko4,5, Jaroslav Tintěra6,7, Isaura Oliver1, Jörn Davidsen8.   

Abstract

Maximum entropy estimation is of broad interest for inferring properties of systems across many disciplines. Using a recently introduced technique for estimating the maximum entropy of a set of random discrete variables when conditioning on bivariate mutual informations and univariate entropies, we show how this can be used to estimate the direct network connectivity between interacting units from observed activity. As a generic example, we consider phase oscillators and show that our approach is typically superior to simply using the mutual information. In addition, we propose a nonparametric formulation of connected informations, used to test the explanatory power of a network description in general. We give an illustrative example showing how this agrees with the existing parametric formulation, and demonstrate its applicability and advantages for resting-state human brain networks, for which we also discuss its direct effective connectivity. Finally, we generalize to continuous random variables and vastly expand the types of information-theoretic quantities one can condition on. This allows us to establish significant advantages of this approach over existing ones. Not only does our method perform favorably in the undersampled regime, where existing methods fail, but it also can be dramatically less computationally expensive as the cardinality of the variables increases.

Entities:  

Year:  2017        PMID: 28765522      PMCID: PMC5539257          DOI: 10.1038/s41598-017-06208-w

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  29 in total

1.  Statistical mechanics for natural flocks of birds.

Authors:  William Bialek; Andrea Cavagna; Irene Giardina; Thierry Mora; Edmondo Silvestri; Massimiliano Viale; Aleksandra M Walczak
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-16       Impact factor: 11.205

2.  Multivariate dependence and genetic networks inference.

Authors:  A A Margolin; K Wang; A Califano; I Nemenman
Journal:  IET Syst Biol       Date:  2010-11       Impact factor: 1.615

3.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

4.  Prediction of spatiotemporal patterns of neural activity from pairwise correlations.

Authors:  O Marre; S El Boustani; Y Frégnac; A Destexhe
Journal:  Phys Rev Lett       Date:  2009-04-02       Impact factor: 9.161

5.  The role of nonlinearity in computing graph-theoretical properties of resting-state functional magnetic resonance imaging brain networks.

Authors:  D Hartman; J Hlinka; M Palus; D Mantini; M Corbetta
Journal:  Chaos       Date:  2011-03       Impact factor: 3.642

6.  Small-world bias of correlation networks: From brain to climate.

Authors:  Jaroslav Hlinka; David Hartman; Nikola Jajcay; David Tomeček; Jaroslav Tintěra; Milan Paluš
Journal:  Chaos       Date:  2017-03       Impact factor: 3.642

7.  Functional connectivity in resting-state fMRI: is linear correlation sufficient?

Authors:  Jaroslav Hlinka; Milan Palus; Martin Vejmelka; Dante Mantini; Maurizio Corbetta
Journal:  Neuroimage       Date:  2010-08-25       Impact factor: 6.556

8.  Symbolic transfer entropy.

Authors:  Matthäus Staniek; Klaus Lehnertz
Journal:  Phys Rev Lett       Date:  2008-04-14       Impact factor: 9.161

9.  Direct-coupling information measure from nonuniform embedding.

Authors:  D Kugiumtzis
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-06-25

10.  Identifying causal gateways and mediators in complex spatio-temporal systems.

Authors:  Jakob Runge; Vladimir Petoukhov; Jonathan F Donges; Jaroslav Hlinka; Nikola Jajcay; Martin Vejmelka; David Hartman; Norbert Marwan; Milan Paluš; Jürgen Kurths
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

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  1 in total

1.  Network structure from a characterization of interactions in complex systems.

Authors:  Thorsten Rings; Timo Bröhl; Klaus Lehnertz
Journal:  Sci Rep       Date:  2022-07-11       Impact factor: 4.996

  1 in total

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