Literature DB >> 28762982

Anharmonic motions versus dynamic disorder at the Mg ion from the charge densities in pyrope (Mg3Al2Si3O12) crystals at 30 K: six of one, half a dozen of the other.

Riccardo Destro1, Riccardo Ruffo2, Pietro Roversi3, Raffaella Soave4, Laura Loconte1, Leonardo Lo Presti1.   

Abstract

The possible occurrence of static/dynamic disorder at the Mg site in pyrope (Mg3Al2Si3O12), with or without anharmonic contribution to the thermal vibrations even at low temperatures, has been largely debated but conclusions were contrasting. Here a report is given on the experimental charge density distribution, ρEXP, of synthetic pyrope at T = 30 K, built through a Stewart multipolar expansion up to l = 5 and based on a very precise and accurate set of in-home measured single-crystal X-ray diffraction amplitudes with a maximum resolution of 0.44 Å. Local and integral topological properties of ρEXP are in substantial agreement with those of ρTHEO, the corresponding DFT-grade quantum charge density of an ideal pyrope crystal, and those derived from synchrotron investigations of chemical bonding in olivines. Relevant thermal atomic displacements, probably anharmonic in nature, clearly affect the whole structure down to 30 K. No significant (> 2.5σ) residual Fourier peaks are detectable from the ρEXP distribution around Mg, after least-squares refinement of a multipole model with anharmonic thermal motion at the Mg site. Experimental findings were confirmed by a full analysis of normal vibration modes of the DFT-optimized structure of the perfect pyrope crystal. Mg undergoes wide displacements from its equilibrium position even at very low temperatures, as it is allocated in a ∼ 4.5 Å large dodecahedral cavity and involved in several soft phonon modes. Implications on the interplay among static/dynamic disorder of Mg and lattice vibrational degrees of freedom are discussed.

Entities:  

Keywords:  anharmonic motion; cryocrystallography; disorder; experimental charge density; pyrope garnet; quantum theory of atoms in molecules

Year:  2017        PMID: 28762982      PMCID: PMC6181205          DOI: 10.1107/S2052520617006102

Source DB:  PubMed          Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater        ISSN: 2052-5192


  25 in total

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Authors:  Venkatesha R Hathwar; Tejender S Thakur; Ritesh Dubey; Mysore S Pavan; Tayur N Guru Row; Gautam R Desiraju
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7.  Combined X-ray and neutron diffraction study of vacancies and disorder in the dimorphic clathrate Ba8Ga16Sn30 of type I and VIII.

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Journal:  J Chem Phys       Date:  2008-01-28       Impact factor: 3.488

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Authors:  Swastik Mondal; Elena Bykova; Somnath Dey; Sk Imran Ali; Natalia Dubrovinskaia; Leonid Dubrovinsky; Gleb Parakhonskiy; Sander van Smaalen
Journal:  Sci Rep       Date:  2016-01-18       Impact factor: 4.379

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Journal:  IUCrJ       Date:  2020-03-07       Impact factor: 4.769

2.  Relativistic Hirshfeld atom refinement of an organo-gold(I) compound.

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