Literature DB >> 23241030

Anharmonic motion in experimental charge density investigations.

Regine Herbst-Irmer1, Julian Henn, Julian J Holstein, Christian B Hübschle, Birger Dittrich, Daniel Stern, Daniel Kratzert, Dietmar Stalke.   

Abstract

In the charge density study of 9-diphenylthiophosphinoylanthracene the thermal motion of several atoms needed an anharmonic description via Gram-Charlier coefficients even for data collected at 15 K. As several data sets at different temperatures were measured, this anharmonic model could be proved to be superior to a disorder model. Refinements against theoretical data showed the resemblance of an anharmonic model and a disorder model with two positions very close to each other (~0.2 Å), whereas these two models could be clearly distinguished if the second position is 0.5 Å apart. The refined multipole parameters were distorted when the anharmonic motion was not properly refined. Therefore, this study reveals the importance of detecting and properly handling anharmonic motion. Unrefined anharmonic motion leads to typical shashlik-like residual density patterns. Therefore, careful analysis of the residual density and the derived probability density function after the refinement of the Gram-Charlier coefficients proved to be the most useful tools to indicate the presence of anharmonic motion.

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Year:  2013        PMID: 23241030     DOI: 10.1021/jp309985e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  Anharmonic motions versus dynamic disorder at the Mg ion from the charge densities in pyrope (Mg3Al2Si3O12) crystals at 30 K: six of one, half a dozen of the other.

Authors:  Riccardo Destro; Riccardo Ruffo; Pietro Roversi; Raffaella Soave; Laura Loconte; Leonardo Lo Presti
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2017-07-25

2.  The nature of the chemical bond in oxyanionic crystals based on QTAIM topological analysis of electron densities.

Authors:  Dmitry V Korabel'nikov; Yuriy N Zhuravlev
Journal:  RSC Adv       Date:  2019-04-16       Impact factor: 4.036

Review 3.  Contemporary X-ray electron-density studies using synchrotron radiation.

Authors:  Mads R V Jørgensen; Venkatesha R Hathwar; Niels Bindzus; Nanna Wahlberg; Yu-Sheng Chen; Jacob Overgaard; Bo B Iversen
Journal:  IUCrJ       Date:  2014-08-29       Impact factor: 4.769

4.  Aligning experimental and theoretical anisotropic B-factors: water models, normal-mode analysis methods, and metrics.

Authors:  Lei Zhou; Qinglian Liu
Journal:  J Phys Chem B       Date:  2014-04-08       Impact factor: 2.991

5.  Validation of experimental charge-density refinement strategies: when do we overfit?

Authors:  Lennard Krause; Benedikt Niepötter; Christian J Schürmann; Dietmar Stalke; Regine Herbst-Irmer
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

6.  Relativistic Hirshfeld atom refinement of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Magdalena Woińska; Jakub Wojciechowski; Lorraine Andrade Malaspina; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2021-05-26       Impact factor: 4.769

7.  Anharmonicity and isomorphic phase transition: a multi-temperature X-ray single-crystal and powder diffraction study of 1-(2'-aminophenyl)-2-methyl-4-nitroimidazole.

Authors:  Agnieszka Poulain; Emmanuel Wenger; Pierrick Durand; Katarzyna N Jarzembska; Radosław Kamiński; Pierre Fertey; Maciej Kubicki; Claude Lecomte
Journal:  IUCrJ       Date:  2014-02-28       Impact factor: 4.769

  7 in total

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