Literature DB >> 28759004

A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.

Jiyeon Choi1, Mai Xu1, Matthew M Makowski2, Tongwu Zhang1, Matthew H Law3, Michael A Kovacs1, Anton Granzhan4, Wendy J Kim1, Hemang Parikh1,5, Michael Gartside3, Jeffrey M Trent6, Marie-Paule Teulade-Fichou4, Mark M Iles7, Julia A Newton-Bishop7, D Timothy Bishop7, Stuart MacGregor3, Nicholas K Hayward3, Michiel Vermeulen2, Kevin M Brown1.   

Abstract

Previous genome-wide association studies have identified a melanoma-associated locus at 1q42.1 that encompasses a ∼100-kb region spanning the PARP1 gene. Expression quantitative trait locus (eQTL) analysis in multiple cell types of the melanocytic lineage consistently demonstrated that the 1q42.1 melanoma risk allele (rs3219090[G]) is correlated with higher PARP1 levels. In silico fine-mapping and functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r2 = 0.947 with rs3219090), as displaying allele-specific transcriptional activity. A proteomic screen identified RECQL as binding to rs144361550 in an allele-preferential manner. In human primary melanocytes, PARP1 promoted cell proliferation and rescued BRAFV600E-induced senescence phenotypes in a PARylation-independent manner. PARP1 also transformed TERT-immortalized melanocytes expressing BRAFV600E. PARP1-mediated senescence rescue was accompanied by transcriptional activation of the melanocyte-lineage survival oncogene MITF, highlighting a new role for PARP1 in melanomagenesis.

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Year:  2017        PMID: 28759004     DOI: 10.1038/ng.3927

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  61 in total

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Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

3.  Common sequence variants on 20q11.22 confer melanoma susceptibility.

Authors:  Kevin M Brown; Stuart Macgregor; Grant W Montgomery; David W Craig; Zhen Zhen Zhao; Kelly Iyadurai; Anjali K Henders; Nils Homer; Megan J Campbell; Mitchell Stark; Shane Thomas; Helen Schmid; Elizabeth A Holland; Elizabeth M Gillanders; David L Duffy; Judith A Maskiell; Jodie Jetann; Megan Ferguson; Dietrich A Stephan; Anne E Cust; David Whiteman; Adele Green; Håkan Olsson; Susana Puig; Paola Ghiorzo; Johan Hansson; Florence Demenais; Alisa M Goldstein; Nelleke A Gruis; David E Elder; Julia Newton Bishop; Richard F Kefford; Graham G Giles; Bruce K Armstrong; Joanne F Aitken; John L Hopper; Nicholas G Martin; Jeffrey M Trent; Graham J Mann; Nicholas K Hayward
Journal:  Nat Genet       Date:  2008-05-18       Impact factor: 38.330

4.  Induction of melanocyte-specific microphthalmia-associated transcription factor by Wnt-3a.

Authors:  K Takeda; K Yasumoto; R Takada; S Takada; K Watanabe; T Udono; H Saito; K Takahashi; S Shibahara
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

Review 5.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

6.  The inherent cytotoxicity of melanin precursors: a revision.

Authors:  K Urabe; P Aroca; K Tsukamoto; D Mascagna; A Palumbo; G Prota; V J Hearing
Journal:  Biochim Biophys Acta       Date:  1994-04-28

7.  The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription.

Authors:  David A Wacker; Donald D Ruhl; Ehsan H Balagamwala; Kristine M Hope; Tong Zhang; W Lee Kraus
Journal:  Mol Cell Biol       Date:  2007-09-04       Impact factor: 4.272

Review 8.  Transcriptional roles of PARP1 in cancer.

Authors:  Matthew J Schiewer; Karen E Knudsen
Journal:  Mol Cancer Res       Date:  2014-06-10       Impact factor: 5.852

9.  Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence.

Authors:  Masashi Narita; Sabrina Nũnez; Edith Heard; Masako Narita; Athena W Lin; Stephen A Hearn; David L Spector; Gregory J Hannon; Scott W Lowe
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

10.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

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  28 in total

Review 1.  Deciphering the Emerging Complexities of Molecular Mechanisms at GWAS Loci.

Authors:  Maren E Cannon; Karen L Mohlke
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Review 2.  Host-Intrinsic Interferon Status in Infection and Immunity.

Authors:  Beiyun C Liu; Joseph Sarhan; Alexander Poltorak
Journal:  Trends Mol Med       Date:  2018-07-07       Impact factor: 11.951

Review 3.  Enhancers: bridging the gap between gene control and human disease.

Authors:  Jaret M Karnuta; Peter C Scacheri
Journal:  Hum Mol Genet       Date:  2018-08-01       Impact factor: 6.150

4.  FUN-LDA: A Latent Dirichlet Allocation Model for Predicting Tissue-Specific Functional Effects of Noncoding Variation: Methods and Applications.

Authors:  Daniel Backenroth; Zihuai He; Krzysztof Kiryluk; Valentina Boeva; Lynn Pethukova; Ekta Khurana; Angela Christiano; Joseph D Buxbaum; Iuliana Ionita-Laza
Journal:  Am J Hum Genet       Date:  2018-05-03       Impact factor: 11.025

Review 5.  Melanoma: Genetic Abnormalities, Tumor Progression, Clonal Evolution and Tumor Initiating Cells.

Authors:  Ugo Testa; Germana Castelli; Elvira Pelosi
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6.  MX 2 is a novel regulator of cell cycle in melanoma cells.

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Journal:  Pigment Cell Melanoma Res       Date:  2019-11-13       Impact factor: 4.693

7.  Functional annotation and investigation of the 10q24.33 melanoma risk locus identifies a common variant that influences transcriptional regulation of OBFC1.

Authors:  Antonella Cardinale; Sueva Cantalupo; Vito Alessandro Lasorsa; Annalaura Montella; Flora Cimmino; Mariangela Succoio; Michiel Vermeulen; Marijke P Baltissen; Matteo Esposito; Marianna Avitabile; Daniela Formicola; Alessandro Testori; Ferdinando Bonfiglio; Paola Ghiorzo; Massimiliano Scalvenzi; Fabrizio Ayala; Nicola Zambrano; Mark M Iles; Mai Xu; Matthew H Law; Kevin M Brown; Achille Iolascon; Mario Capasso
Journal:  Hum Mol Genet       Date:  2022-03-21       Impact factor: 5.121

8.  A UVB-responsive common variant at chromosome band 7p21.1 confers tanning response and melanoma risk via regulation of the aryl hydrocarbon receptor, AHR.

Authors:  Mai Xu; Lindsey Mehl; Tongwu Zhang; Rohit Thakur; Hayley Sowards; Timothy Myers; Lea Jessop; Alessandra Chesi; Matthew E Johnson; Andrew D Wells; Helen T Michael; Patricia Bunda; Kristine Jones; Herbert Higson; Rebecca C Hennessey; Ashley Jermusyk; Michael A Kovacs; Maria Teresa Landi; Mark M Iles; Alisa M Goldstein; Jiyeon Choi; Stephen J Chanock; Struan F A Grant; Raj Chari; Glenn Merlino; Matthew H Law; Kevin M Brown
Journal:  Am J Hum Genet       Date:  2021-08-02       Impact factor: 11.025

9.  Cell-type-specific meQTLs extend melanoma GWAS annotation beyond eQTLs and inform melanocyte gene-regulatory mechanisms.

Authors:  Tongwu Zhang; Jiyeon Choi; Ramile Dilshat; Berglind Ósk Einarsdóttir; Michael A Kovacs; Mai Xu; Michael Malasky; Salma Chowdhury; Kristine Jones; D Timothy Bishop; Alisa M Goldstein; Mark M Iles; Maria Teresa Landi; Matthew H Law; Jianxin Shi; Eiríkur Steingrímsson; Kevin M Brown
Journal:  Am J Hum Genet       Date:  2021-07-21       Impact factor: 11.025

Review 10.  PARP1 in Carcinomas and PARP1 Inhibitors as Antineoplastic Drugs.

Authors:  Luyao Wang; Chao Liang; Fangfei Li; Daogang Guan; Xiaoqiu Wu; Xuekun Fu; Aiping Lu; Ge Zhang
Journal:  Int J Mol Sci       Date:  2017-10-08       Impact factor: 5.923

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