Daniele Ongari1, Davide Tiana1, Samuel J Stoneburner2, Laura Gagliardi2, Berend Smit1. 1. Laboratory of Molecular Simulation, Institut des Sciences et Ingeénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), Rue de l'Industrie 17, CH-1951 Sion, Valais, Switzerland. 2. Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, United States.
Abstract
The copper paddle-wheel is the building unit of many metal organic frameworks. Because of the ability of the copper cations to attract polar molecules, copper paddle-wheels are promising for carbon dioxide adsorption and separation. They have therefore been studied extensively, both experimentally and computationally. In this work we investigate the copper-CO2 interaction in HKUST-1 and in two different cluster models of HKUST-1: monocopper Cu(formate)2 and dicopper Cu2(formate)4. We show that density functional theory methods severely underestimate the interaction energy between copper paddle-wheels and CO2, even including corrections for the dispersion forces. In contrast, a multireference wave function followed by perturbation theory to second order using the CASPT2 method correctly describes this interaction. The restricted open-shell Møller-Plesset 2 method (ROS-MP2, equivalent to (2,2) CASPT2) was also found to be adequate in describing the system and used to develop a novel force field. Our parametrization is able to predict the experimental CO2 adsorption isotherms in HKUST-1, and it is shown to be transferable to other copper paddle-wheel systems.
The copper paddle-wheel is the building unit of many metal organic frameworks. Because of the ability of the coppercations to attract polar molecules, copper paddle-wheels are promising for carbon dioxide adsorption and separation. They have therefore been studied extensively, both experimentally and computationally. In this work we investigate the copper-CO2 interaction in HKUST-1 and in two different cluster models of HKUST-1: monocopperCu(formate)2 and dicopperCu2(formate)4. We show that density functional theory methods severely underestimate the interaction energy between copper paddle-wheels and CO2, even including corrections for the dispersion forces. In contrast, a multireference wave function followed by perturbation theory to second order using the CASPT2 method correctly describes this interaction. The restricted open-shell Møller-Plesset 2 method (ROS-MP2, equivalent to (2,2) CASPT2) was also found to be adequate in describing the system and used to develop a novel force field. Our parametrization is able to predict the experimental CO2 adsorption isotherms in HKUST-1, and it is shown to be transferable to other copper paddle-wheel systems.
Metal
organic frameworks (MOFs) are a class of three-dimensional
nanoporous materials composed of metal nodes connected by organic
ligands. The oriented coordination bond between these two components
is responsible for the structure of the crystal. The possibility of
combining different metals with different ligands provides a large
variety of MOF structures. More than 10 000 structures have
already been synthesized,[1] but this is
only a small fraction of the hundreds of thousands of structures that
have been predicted computationally.[2]MOFs have attracted considerable attention in the past decade for
various applications, including gas adsorption and storage,[3] gas separation,[4] fuel
production,[5] chemical sensing,[6] and catalysis.[7]Computational modeling is extensively used to investigate the properties
of synthesized materials for a given application and to predict the
performance of hypothetical structures. In the case of gas adsorption,
the quality of the model directly derives from the accuracy with which
one can describe the microscopic interactions between the guest molecules
and the framework. Density functional theory (DFT) calculations are
routinely used for this purpose.[8−10] However, weak interactions, due
to dispersion forces arising from electron correlation, are poorly
described by standard DFT methods. Corrections need to be introduced
for this purpose (see the recent review of Grimme et al.[11] and references therein). Alternatively, post-Hartree–Fock
methods can be employed to evaluate interaction energies with high
accuracy. However, because of the unfavorable scaling with the size
of the system, they can hardly be used directly to compute interaction
energies in MOFs, whose unit cells typically contains hundreds of
atoms.[10]This work focuses on the
interaction between the carbon dioxide
molecule and the copper(II) paddle-wheel, which is a metal organic
structure composed of two coppercations connected to four carboxylates
anions in a square planar coordination geometry. The smallest example
of this structure is the Cu2(formate)4 molecule
(Figure , left).
Figure 1
Copper
paddle-wheel structure is composed of two coppers atoms
bridged though four dicarboxilate anions. Cu2(formate)4 (left) represents the simplest paddle-wheel geometry possible.
Dicopper benzyl-1,2,3-trimetylcarboxylate, Cu2(BTC)4 (right), is the building unit of the HKUST-1 framework: each
BTC has three caboxylate groups that allow creation of a three-dimensional
network.
Copper
paddle-wheel structure is composed of two coppers atoms
bridged though four dicarboxilate anions. Cu2(formate)4 (left) represents the simplest paddle-wheel geometry possible.
Dicopper benzyl-1,2,3-trimetylcarboxylate, Cu2(BTC)4 (right), is the building unit of the HKUST-1 framework: each
BTC has three caboxylate groups that allow creation of a three-dimensional
network.The copper paddle-wheel is the
building unit of many MOFs, including
HKUST-1 (Cu3(BTC)2), as shown in Figure , right. The structure of HKUST-1
presents three pores (Figure , left) and several characteristic adsorption sites for CO2 (Figure ,
right). The biggest pore is characterized by the presence of 12 open
metal sites (OMSs), i.e., unsaturated coppercations which are obtained
after solvent removal and which are able to attract polar molecules
through electrostatic interaction.
Figure 2
Three different pores in HKUST-1 (left):
big pore (blue), medium
pore with open metal sites (green), and small pore (yellow). Characteristic
sites of adsorption for CO2 (right): open metal site (blue),
small pore window (green), small pore center (yellow), and large pore
corner (purple).
Three different pores in HKUST-1 (left):
big pore (blue), medium
pore with open metal sites (green), and small pore (yellow). Characteristic
sites of adsorption for CO2 (right): open metal site (blue),
small pore window (green), small pore center (yellow), and large pore
corner (purple).HKUST-1 is one of the
earlier reported MOFs.[12] It is among the
best performers for natural gas storage,[13] and it has also attracted interest for gas separation[14−16] and heterogeneous catalysis.[17−19] Because of its popularity, much
experimental data is available for this framework. Wu et al.[20] conducted in situ neutron diffraction studies
for CO2 adsorption in HKUST-1 which show that at low loading
of CO2 and low temperature (20 K) the open metal site is
the strongest adsorption site because it is the only one to be occupied
at a 1:1 CO2:Cu ratio of loading. They were also able to
rank the strength of the secondary sites by increasing the amount
of CO2 and observing the filling in each site: small pore
windows sites and center sites are the second and the third, respectively,
and large pore corner sites are the fourth in terms of order of filling
and therefore interaction energy strength.In recent work, Grajciar
et al.[21] showed
that DFT dispersion-corrected methods, e.g., Grimme’s pairwise
correction for dispersions (D2[22] and D3[23]) and van der Waals density functionals (vdW-DF[24] and vdW-DF2[25]), underestimate
the strength of the open metal site and are not able to reproduce
the experimental adsorption data obtained by Wu et al.The van
der Waals density functional methods, in particular, were
used previously by our group to compute the CO2 binding
energy in MOF-74 for different metals[8,26−28] and to parametrize the associated force field.[29,30] A good agreement with experiment was always observed, giving rise
to the question of why the same ab initio methods are not able to
model correctly the CO2 interaction with the open metal
site in a copper paddle-wheel framework. This underestimation of the
interactions in HKUST-1 motivated Grajciar et al. to employ a DFT-coupled
clusters corrected (DFT/CC) method[31] to
study this system and obtain a tailormade correction for the CO2 interaction with HKUST-1. In DFT/CC, the error associated
with the PBE density functional is corrected by a term dependent on
the pairwise distance between the CO2 atoms and the atoms
of the framework. This term was estimated from the difference between
the DFT and the CCSD(T)-computed one-dimensional potential energy
curves of CO2 interacting with some other reference molecules,
i.e., H2, benzene, CO2, and Cu(formate)2.It is known that a copper–copper magnetic interaction
is
present in HKUST-1,[32] and consequently,
the correlation between the electrons of the two copperscan affect
the interaction with the CO2. Because of this we investigated
the legitimacy of transferring the DFT error for CO2 interaction
from the monocopper system Cu(formate)2 to the dicopper
paddle-wheel structure (and to the HKUST-1 framework) by using multireference
wave function methods. These methods are critical for accurately modeling
systems with a relevant magneticcoupling such as the Cu paddle-wheel.[33−35] Accordingly, we explored in this work the adequacy of different
quantum methods for describing the electronic structure of the system
and the interaction between the metalcation and carbon dioxide.Furthermore, we used our insights to develop a classical force
field that is able to accurately describe the Cu paddle-wheel interaction
with CO2 and model the adsorption in MOFs containing this
building unit. It was estimated[36] that
among 4764 three-dimensional MOF structures from the Cambridge Structural
Database[37] (as refined in the CoRE MOF
database),[38] 4.2% of them contains the
Cu paddle-wheel and another 3.5% contains the paddle-wheel motif formed
by other cations. Cu paddle-wheels are a recurrent building unit among
the different MOFs, and with a reliable and transferable force field
it would be possible to also screen these frameworks and identify
their performance for CO2 adsorption.
Computational
Methods
The periodiccalculations were performed using the
Perdew–Burke–Ernzerhof
GGA method PBEsol[39] to optimize the framework
and the second version of van der Waals dispersion-corrected density
functional vdW-DF2[25] to compute the interactions.
The plane wave Quantum Espresso 5.4 package[40] was employed. We adopted the projector augmented wave (PAW) method[41,42] with a cutoff energy of 60 Ry for the wave function and 300 Ry for
the electron density. Due to the dimension of the unit cell of HKUST-1
a Γ-point sampling of the Brillouin zone integration was used
with a smearing occupation of 0.02 Ry.For the cluster calculations,
geometry optimizations were performed
using the unrestricted M06-L/cc-pVDZ[43] level
of theory, and subsequent single-point energy difference calculations
were performed using restricted open-shell MP2[44] (ROS-MP2) and unrestricted M06-L and M06.[43] The Gaussian 09 package[45] was
employed. We tested the convergence of the basis set using cc-pVDZ,
AUG-cc-pVDZ, cc-pVTZ, and AUG-cc-pVTZ.[46−49] A spin multiplicity of three
was used to model the magnetic state of the copper paddle-wheel clusters.
To account for the error in computing the interaction due to the basis
set superposition, the counterpoise method by Boys and Bernardi was
employed.[50] For the ROS-MP2calculations
the frozen orbitals are the 1s for C and O and 1s, 2s, 2p, 3s, and
3p for Cu.Multireference calculations were performed on the
cluster models
using the complete active space self-consistent field method (CASSCF)[51] followed by second-order perturbation theory
(CASPT2)[52] using Molcas 8.2.[53] All CASSCF/CASPT2 calculations were performed
without symmetry. Relativistic basis sets of atomic natural orbital
type (ANO-RCC)[54] were employed for all
atoms. To explore basis set convergence, three different basis sets
of increasing size were tested. The first one, BS1, is of double-ζ
quality plus polarization; the second one, BS2, is of triple-ζ
quality plus polarization on Cu, O, and C atoms and double-ζ
quality plus polarization on H atoms; the third one, BS3, is of quadruple-ζ
quality plus polarization for Cu and CO2, triple-ζ
quality plus polarization on the remaining C and O atoms, and double-ζ
quality plus polarization on H atoms. Scalar relativistic effects
were included using the Douglas–Kroll–Hess Hamiltonian.[55] The computational cost arising from the two-electron
integrals was drastically reduced by employing the Cholesky decomposition
technique.[56] The decomposition threshold
was chosen to be 10–4, as this should correspond
to an accuracy in total energies of the order of mHartree or higher.
In the CASPT2 calculations, in order to prevent possible intruder
states, an imaginary shift of 0.1 au was added to the zero-order Hamiltonian.
The default IPEA shift of 0.25 au was used. The default choices of
the program were employed for freezing orbitals, resulting in the
1s orbitals of C and O being frozen, along with the 1s, 2s, 2p, and
3s orbitals of Cu.For the cluster models the interaction energy
between the framework
and the CO2 molecule was computed as the difference between
the energy of the supersystem, the framework plus CO2,
and the energies of the two isolated components, namely, CO2 and the framework.The Raspa 2.0 package[57] was employed
for the force field calculations. In all simulations TraPPE[58] Lennard–Jones parameters and charges
were used to model CO2–CO2 interactions,
while different sets of parameters were used to model the framework–CO2 interaction, as discussed within the results. The details
of the simulations are provided in the Supporting Information.
Results and Discussion
Comparison of Simulated and Experimental Isotherms
in HKUST-1
The CO2 isotherms computed with the
standard force field, i.e., UFF,[59] DREIDING,[60] and TraPPE,[58] are
found to be in strong disagreement with the experimental data in the
range of pressure from 0 to 1 bar. Figure shows the simulated isotherms computed using
the Grand Canonical Monte Carlo (GCMC) technique with different sets
of parameters for the dispersion forces and the corresponding experimental
isotherms.
Figure 3
Comparison of experimental (295[14] and
303 K[31]) and simulated adsorption isotherms.
TraPPE[58] Lennard–Jones parameters
and charges are used for CO2–CO2 interactions.
To compute the dispersion forces acting between CO2 guest
molecules and the crystal, three commonly used approaches are compared.
First, we used Lennard–Jones parameters from UFF[59] (Lorentz–Berthelot mixing rules). Then
we used UFF/TraPPE and DREIDING/TraPPE parameters[60] (notation FFframework/FFadsorbate). The point charges for the framework
atoms are extracted from a PBEsol DFT calculation using the REPEAT
scheme;[61] in the Supporting Information we report the charges’ values and compare
them with the values obtained by using Bader’s method.[62] The framework is assumed to be rigid in all
simulations.
Comparison of experimental (295[14] and
303 K[31]) and simulated adsorption isotherms.
TraPPE[58] Lennard–Jones parameters
and charges are used for CO2–CO2 interactions.
To compute the dispersion forces acting between CO2 guest
molecules and the crystal, three commonly used approaches are compared.
First, we used Lennard–Jones parameters from UFF[59] (Lorentz–Berthelot mixing rules). Then
we used UFF/TraPPE and DREIDING/TraPPE parameters[60] (notation FFframework/FFadsorbate). The point charges for the framework
atoms are extracted from a PBEsol DFT calculation using the REPEAT
scheme;[61] in the Supporting Information we report the charges’ values and compare
them with the values obtained by using Bader’s method.[62] The framework is assumed to be rigid in all
simulations.All simulations underestimate
the uptake of CO2, which
means that the force field underestimates the adsorbate–host
interactions. The force field interaction energies for specific sites
are compared to those obtained by DFT calculations in Table . The binding energy for each
site, corresponding to the optimized position of a CO2 molecule
in the open metal site, in the small pore window site, and in the
small pore center site, are reported.
Table 1
Interaction
Energy (kJ/mol) between
CO2 and HKUST-1 for Different Adsorption Sitesa
method
open metal
window
center
FF (UFF/UFF)
–19.3
–25.7
–26.3
FF (UFF/TraPPE)
–19.0
–27.5
–29.0
FF (DREIDING/TraPPE)
–19.4
–27.2
–28.5
DFT (vdW-DF2)
–22.1
–30.2
–26.3
DFT (PBEsol)
–12.1
–6.7
–0.8
DFT/CC (Grajciar et al.[31])
–28.2
–23.1
–23.2
The open metal
site in the apical
position of the copper paddle-wheel, the window, and the center of
small octahedral pores. Force field and periodic DFT calculations
are compared. Results obtained with PBEsol show the evident inadequacy
of pure DFT methods to model noncovalent interactions.
The open metal
site in the apical
position of the copper paddle-wheel, the window, and the center of
small octahedral pores. Force field and periodic DFT calculations
are compared. Results obtained with PBEsol show the evident inadequacy
of pure DFT methods to model noncovalent interactions.From neutron diffraction in situ
experiments by Wu et al. we know
that OMSs are the first filled sites; then windows and cage sites
get populated by CO2. This observation proves that OMSs
have the strongest binding energy. Despite the fact that UFF/UFF,
UFF/TraPPE, and DREIDING/TraPPE force fields are giving similar results
to the vdW-DF2 method and this could in principle validate the force
fields, we clearly see from Table that in all four of these cases the OMS is predicted
to be the weakest site. As a consequence, these standard methods erroneously
predict that the OMS is poorly occupied, as its interaction energies
with CO2 are ∼4kbT and ∼60kbT weaker than other sites at 303 and 20K, respectively. Standard force
fields are known to incorrectly model the strong interaction of adsorbate
molecules with OMSs in MOFs,[63] but vdW-DF2
is also showing the same problem in the case of copper paddle-wheel,
while it was found to model accurately the open metal site interaction
with CO2 for other MOFs.[26,29,30]There are different assumptions in these calculations
that may
not hold for this system; therefore, the interaction energy between
carbon dioxide and the copper atom in HKUST-1 was also computed using
other approaches. We considered introduction of the Hubbard correction[64] to model the d orbitals of copper, because it
was shown to influence the CO2 interaction with the OMS
in MOF-74.[26,65] The value of U = 3.8 eV, which can reproduce the experimental oxidation energy
of copper,[66] was used. Also, different
versions of the van der Waals density functional were compared to
the vdw-DF2 method, i.e., vdW-DF[67] and
revised-vdW-DF2.[68] In all cases the geometry
of CO2 was optimized keeping the framework rigid, as obtained
from the PBEsol calculation. The results are reported in Table . No significant deviations
in the interaction energy were found, the only slightly increased
value being obtained with vdW-DF, which is known to systematically
overestimate dispersion interactions.[69]
Table 2
CO2 Open Metal Site Interaction
Energies in HKUST-1 Computed with Different Dispersion-Corrected DFT
Methods
method
open metal
site interaction
vdW-DF
–24.9 kJ/mol
vdW-DF2
–22.1 kJ/mol
vdW-DF2+U
–21.4 kJ/mol
vdW-DF2-rev
–20.2 kJ/mol
Finally, the rigid framework assumption was neglected,
performing
a full optimization of the framework’s atoms with the adsorbed
molecule in the OMS, using vdW-DF2. No significant deviation in the
binding energy was found: −1.6 kJ/mol of difference from the
rigid calculation. Moreover, we noticed an exaggerated distortion
of the copper paddle-wheel structure which has not been reported experimentally,
suggesting the inadequacy of the vdW-DF2 method to optimize the crystal
geometry. The rigidity of the adsorbent was therefore assumed as reasonable.
Interactions Computed in the Cluster Models
To understand why the vdW-DF2 method underestimates the CO2–Cu interaction in HKUST-1, we analyzed two smaller
representative clusters, Cu(formate)2 and Cu2(formate)4. The interaction energy with carbon dioxide
was scanned at different distances by keeping the CO2 molecule
perpendicular to the CuO4 plane, as shown in Figure .
Figure 4
Path representation of
linear scans of CO2 interacting
with Cu(formate)2 (left) and Cu2(formate)4 (right). Dotted line, along which the CO2 molecule
is displaced, is perpendicular to the CuO4 plane.
Path representation of
linear scans of CO2 interacting
with Cu(formate)2 (left) and Cu2(formate)4 (right). Dotted line, along which the CO2 molecule
is displaced, is perpendicular to the CuO4 plane.This configuration, referred here
as “linear”, was
chosen to decrease the number of degrees of freedom for the CO2 position to just one, i.e., the copper–oxygen distance
in the axial direction. This configuration also minimizes all pairwise
contributions of the interaction but the copper–oxygen one,
which is the one vdW-DF2 is failing to model properly. Within HKUST-1,
the optimal linear configuration corresponds to a distance of 2.65
Å and a binding energy of −13.4 kJ/mol, computed using
vdW-DF2. Figures and
6 show the interaction energy of CO2 as a function of the Cu–O distance computed with different
methods in Cu(formate)2 and Cu2(formate)4, respectively.
Figure 5
Interaction energy profile for the CO2–Cu(formate)2 linear scan: interaction energy
is plotted as a function
of the distance between the copper atom and the CO2 molecule’s
oxygen.
Figure 6
Interaction energy profile for the CO2–Cu2(formate)4 linear scan: interaction
energy is
plotted as a function of the distance between the CO2 molecule’s
oxygen and the closest copper.
Interaction energy profile for the CO2–Cu(formate)2 linear scan: interaction energy
is plotted as a function
of the distance between the copper atom and the CO2 molecule’s
oxygen.Interaction energy profile for the CO2–Cu2(formate)4 linear scan: interaction
energy is
plotted as a function of the distance between the CO2 molecule’s
oxygen and the closest copper.Inspection of the energy profiles reported in Figure for Cu(formate)2 shows that the CO2–copper binding energies differ
within 4 kJ/mol among the various methods, ranging between −8.0
(vdW-DF2) and −13.1 kJ/mol (MP2). The minimum energy distance
for vdW-DF2 is longer than with the other methods, 2.9 Å instead
of 2.5–2.6 Å. The M06 and M06-L functionals produce similar
energy profiles. Hence, inclusion of the semilocal contribution with
Hartree–Fock exchange present in M06 has a minor effect. It
is also interesting to note the overall good agreement with the UFF
force field. The attraction computed by the force field is mainly
due to the Coulombic (REPEAT-TraPPE) interaction, with only a small
influence of dispersion forces: the electrostaticcontributions represent
96% of the interaction at the optimal distance of 2.5 Å.In the Cu2(formate)4case, vdW-DF2, M06,
and M06-L underestimate the interaction energy compared with ROS-MP2
by 9.1, 6.4, and 5.8 kJ/mol, respectively. Moreover, if compared to
the monocopper system, the ROS-MP2calculation leads to a binding
energy which is 8.5 kJ/mol more stable in this dicopper system.In a second series of calculations we optimized the position of
the CO2 molecule, keeping the Cu2(formate)4cluster rigid. The CO2 molecule creates an angle
with the copper–copper line from 109° (vdW-DF2) to 116°
(M06-L) due to both the interaction of the lone pair of CO2oxygen with the copper and the partially positive CO2carbon with partially negative oxygen from the paddle-wheel. This
optimized configuration is referred here as the “tilted”
position, because of the CO2 inclination with respect to
the CuO4 plane. The interaction energies between Cu2(formate)4 and the linear and tilted configurations
of CO2computed with different methods are reported in Table .
Table 3
Energy of Interaction (kJ/mol) between
Cu2(formate)4 and CO2 in Linear and
Tilted Conformationa
method
linear CO2 interaction energy (kJ/mol)
Cu–O distance (Å)
tilted CO2 interaction energy (kJ/mol)
Cu–O distance (Å)
Cu–O–O angle (deg)
FF(UFF/UFF)
–13.0
2.5
–14.3
2.5
127.4°
ROS-MP2/cc-pVTZ
–18.2 (−24.5)
2.4
–22.9 (−31.3)
(M06-L opt)
(M06-L opt)
ROS-MP2/ANO-RCC(BS2)
–20.4 (−38.0)
2.4
–24.8 (−43.3)
(M06-L opt)
(M06-L opt)
ROS-MP2/aug-cc-pVTZ
–21.6 (−27.1)
2.4
–27.2 (−33.1)
(M06-L opt)
(M06-L opt)
M06/aug-cc-pVTZ
–15.2 (−17.7)
2.4
–21.9 (−25.3)
2.4
114.5°
M06-L/aug-cc-pVTZ
–15.8 (−18.6)
2.4
–23.3 (−26.0)
2.4
115.9°
vdW-DF2/cutoff = 60 Ry
–12.5
2.6
–18.4
2.6
109.9°
For all calculations that employ
Gaussian basis functions, the energies obtained without counterpoise
correction are reported in parentheses. ROS-MP2 calculations without
augmented basis function are included to show the variability due
to their exclusion in computing interactions.[70] ROS-MP2/ANO-RCC calculations are also compared with CASPT2 results
in section : for
consistency we used the same basis set as BS2, with triple-ζ
quality plus polarization on Cu, O, and C atoms and double-ζ
quality plus polarization on H atoms.
For all calculations that employ
Gaussian basis functions, the energies obtained without counterpoise
correction are reported in parentheses. ROS-MP2calculations without
augmented basis function are included to show the variability due
to their exclusion in computing interactions.[70] ROS-MP2/ANO-RCCcalculations are also compared with CASPT2 results
in section : for
consistency we used the same basis set as BS2, with triple-ζ
quality plus polarization on Cu, O, and C atoms and double-ζ
quality plus polarization on H atoms.On the basis of quantum calculations, the tilted conformation
binding
energy is ca. 5.5–7.5 kJ/mol larger than the linear conformation
binding energy. The force field model, based on pairwise interactions,
underestimates this difference at only 1.3 kJ/mol.Finally,
we tested the possible additive effect on the CO2 binding
energy by adding a second CO2 molecule bonded
symmetrically on the other copper of Cu2(formate)4. The binding energies computed with ROS-MP2 for this system do not
show any significant deviation (−21.0 and −26.9 kJ/mol
for the linear and tilted conformations, respectively), and therefore,
any additive effect can reasonably be neglected.To summarize,
vdW-DF2 underestimates the CO2–Cu2(formate)4 binding energy by 9.1 and 8.8 kJ/mol,
respectively, for the linear and tilted configurations, if compared
to the ROS-MP2/aug-cc-pVTZ calculations. Considering the ROS-MP2 results,
we are now able to improve our model for HKUST-1 and similar copper
paddle-wheel MOFs.
Multireference Calculations
To have
more insight into the interaction between CO2 and Cu2(formate)4, we performed wave function-based multireference
complete active space calculations, followed by second-order perturbation
theory.A variety of active spaces were explored, including
an active space with 2 electrons in 2 orbitals (2,2) and one with
10 electrons in 10 orbitals (10,10). The (2,2) CASSCFcalculation
is equivalent to a restricted open-shell (ROS)-HF calculation, while
the (2,2) CASPT2 calculation is equivalent to the ROS-MP2calculation.
Notice that a singletCASSCF (2,2) active space indeed corresponds
to a multireference calculation in the sense that it generates a wave
function that is the combination of two configuration state functions
(or Slater determinants). Both the singlet and the triplet lowest
spin states were explored. In all cases the singlet state is the ground
state and lies 3 kJ/mol lower than the triplet state. This result
is in good agreement with the experimental values obtained for MOF-11:
3.4 and 5.3 kJ/mol, respectively, for the water bound and the anhydrous
structure.[71] It is also in good agreement
with the 3.2 kJ/mol value Maurice et al. calculated with DDCI3 on
a similar system, copper acetate monohydrate.[72]In the following we will discuss the energetics and electronic
structure configurations of the singlet. However, as discussed above
and also in the literature,[33−35] it is reasonable to expect that
the open-shell singlet and the triplet potential energy surfaces have
a parallel shape. The singlet state is a linear combination of two
electronicconfigurations with 50% weight each (See Table S1). The first configuration corresponds to orbital
MO1 doubly occupied (MO12, Figure a) and the second to orbital MO2 doubly
occupied (MO22, Figure b). In the
(2,2) calculations these orbitals are the only ones included in the
active space. They have an average occupation number of about 1 each
(because each of them has only a 50% probability of being doubly occupied).
In the (10,10) calculation, the other orbitals included in the active
space are π and π* orbitals on the O and C atoms of the
paddles. They have occupations of 2 and 0, respectively, within each
pair. Additional details regarding the active space orbitals, including
visual plots of the (10,10) orbitals, are presented in the Supporting Information.
Figure 7
Two molecular orbitals
MO1 (a) and MO2 (b),
in the tilted dicopper system at equilibrium, with their occupation
number in parentheses. In the linear system they look similar. Their
occupation number is 1. They correspond to an overall configuration
of 0.51 MO12 + 0.49 MO22.
Two molecular orbitals
MO1 (a) and MO2 (b),
in the tilted dicopper system at equilibrium, with their occupation
number in parentheses. In the linear system they look similar. Their
occupation number is 1. They correspond to an overall configuration
of 0.51 MO12 + 0.49 MO22.The binding energies are reported
in Table . In the
dicopper system, the binding energy
of CO2 to Cu is significantly larger than in the monocoppercase, as already discussed in section . This behavior can be explained by inspection
of the electronicconfiguration of the Cu2 system. The
two Cu atoms are close enough to have electroniccommunication, and
the overall wave function is a superposition of two electronicconfigurations.
A multiconfigurational method is therefore needed to correctly describe
this system in the singlet ground state. The monocopper system, on
the other hand, has a single configuration, which is reasonably well
described by MP2. The triplet state of the Cu2 system is
also single configurational.
Table 4
CASPT2 Interaction
Energies (kJ/mol)
between Cu2(formate)4 and CO2 in
Linear and Tilted Conformations for Different Active Spaces and Different
Basis Sets for the Singlet Ground Statea
configuration
active space
BS1
BS2
BS3
linear
(2,2)
–15.0 (−43.2)
–18.7 (−33.5)
–20.2 (−31.7)
linear
(10,10)
–14.8 (−46.6)
–18.6 (−36.8)
–20.1 (−35.0)
tilted
(2,2)
–17.7 (−49.3)
–23.5 (−40.0)
–25.8 (−39.6)
tilted
(10,10)
–15.8 (−51.1)
–21.8 (−41.7)
–23.9 (−41.1)
The distance
between CO2 and copper is 2.4 Å for both the linear
and the tilted conformations.
Values include counterpoise correction. Values without counterpoise
correction are in parentheses.
The distance
between CO2 and copper is 2.4 Å for both the linear
and the tilted conformations.
Values include counterpoise correction. Values without counterpoise
correction are in parentheses.The interaction energies for the singlet and triplet states are
very similar (within 1 kJ/mol), and only the singlet energies are
reported in Table . Our results show that an active space of (2,2) followed by PT2,
equivalent to ROS-MP2, is sufficient to describe the binding of this
system, as the binding energy does not change by more than 2 kJ/mol
when increasing the active space to (10,10).Basis set effects
were explored for the CASPT2 calculations. Table shows that on going
from BS1 to BS2 the uncorrected binding energy decreases by about
10 kJ/mol, while it remains almost unchanged on going from BS2 to
BS3. The counterpoise-corrected binding energies change by 3–6
kJ/mol going from BS1 to BS2 while again undergoing little change
when going from BS2 to BS3. The CASPT2 results with the (2,2) active
space reported in Table should be compared to the ROS-MP2/ANO-RCC (BS2) results reported
in Table . The only
difference between these two sets of results is that those in Table are obtained for
the triplet, while those in Table are obtained for the open-shell singlet and with unfrozen
3p orbitals for Cu. The two sets of values including counterpoise
corrections differ by less than 2 kJ/mol, and more generally the most
accurate CASPT2/BS3 energies agrees well with the ROS-MP2/aug-cc-pVTZ
values, especially in the linear conformation (difference of 1.5 kJ/mol).
Correction of the Force Field
In
order to model properly the interaction of carbon dioxide with the
open metal site in a classical force field, we needed to correct the
potential energy curve based on our first-principle calculations.
The most representative path for different CO2–Cu
distances is the one where the energy is mainly influenced by the
interaction with the cation rather than the interaction with other
atoms of the cluster (or framework). Hence, we fitted the linear CO2–Cu2(formate)4curve obtained
with the ROS-MP2/aug-cc-pVTZ method to obtain the new parameters for
the force field. Only the Cu–O van der Waals potential was
tuned while keeping the standard UFF parameters for all other atoms
pairs and REPEAT (PBEsol derived) point charges to model electrostatic
interactions. For the Cu–O interaction, a Buckingham potential
was adopted to correctly represent the repulsion at short distance,
and an r–8 attractive term was
added to account for the stabilization observed in the ROS-MP2calculations.
The details about the fitting and the coefficient for the Cu–O
potential are reported in the Supporting Information. The optimal CO2 interaction with Cu2(formate)4, which corresponds to the tilted conformation, computed with
the fitted force field parameters has a value of −23.2 kJ/mol.
This result is consistent with the UFF difference between the linear
and the tilted configurations of −1.3 kJ/mol. We notice that
by applying this relatively simple but effective correction, obtained
without modifying the pairwise interaction with other atoms and without
introducing a specificcontribution based on the Cu–CO2 angle, the minimum interaction energy obtained for Cu2(formate)4 is in fair agreement with the ROS-MP2
result of −27.2 kJ/mol.Finally, we replicated the GCMC
simulations in HKUST-1 using our UFF parameters with the corrected
Cu–O potential. The comparison with experimental data is reported
in Figure . The simulations
are still slightly underestimating the measured uptake, and this is
reflecting the previously mentioned underestimation of ca. 4 kJ/mol
for the interaction energy in the optimal tilted configuration. However,
the assumptions made for the force field are sufficient to obtain
a good representation of the uptake around ambient temperature and
a significant improvement with respect to the standard force fields.
Figure 8
Comparison
between the experimental[31] and the simulated
isotherms for CO2 inside HKUST-1 at
303 K. Modified UFF force field is obtained by fitting the Cu–O
potential on ROS-MP2 calculations.
Comparison
between the experimental[31] and the simulated
isotherms for CO2 inside HKUST-1 at
303 K. Modified UFF force field is obtained by fitting the Cu–O
potential on ROS-MP2calculations.The minimum energy of interaction computed with our new force
field
in the three main adsorption sites of HKUST-1, i.e., open metal, small
pore window, and small pore center sites, are now ranked correctly,
−27.3, −26.8, and −26.8 kJ/mol, respectively,
and the OMS stability is not underestimated any longer compared to
the in situ experimental results.As a starting point for our
correction, we used UFF/UFF mixed parameters
instead of UFF/TraPPE or DREIDING/TraPPE, because from the simulated
isotherm (Figure )
we can observe that these last force fields are already predicting
the experimental uptake at very low pressure (below 0.1 bar), even
if the open metal site interaction is strongly underestimated. This
is an artifact due to a fortuitous error cancellation with the overestimation
of the interaction in other sites, i.e., the small pores centers (see Table ), which are already
saturated at 0.82 mmol/g, as clearly shown by the deviation of the
simulated isotherm from the experimental one. Therefore, employing
the conventionally used UFF/UFF, UFF/TraPPE, or DREIDING/TraPPE mixed
parameters to describe the guest–host interaction in an analysis
of the site occupancy would lead to wrong conclusions, i.e., that
in HKUST-1 the open metal sites are very poorly occupied at low uptake.[73] Ulterior comparisons with experimental data
is provided in the Supporting Information: CO2 uptake at higher pressure and different temperatures[74] and the heat of desorption as a function of
the uptake.[31,75,76]
Investigation of the “Double”
Open Metal Site Interaction in Cu–TDPAT
To further
test the reliability of our force field, we investigated another interesting
copper paddle-wheel metal organic framework, Cu–TDPAT, first
synthesized by Li et al.[77] The crystalline
structure is characterized by the presence of strong adsorption sites
for CO2, where both oxygens of the guest molecule are attracted
to two different coppercations (Figure ), leading to an interaction energy which
is roughly double with respect to the conventional single open metal
site of copper paddle-wheel.
Figure 9
CO2 molecule adsorbed in the double
open metal site
of Cu–TDPAT.
CO2 molecule adsorbed in the double
open metal site
of Cu–TDPAT.Because of this reason,
Cu–TDPAT is one of the top performing
MOFs for both gravimetric and volumetricCO2 uptake at
ambient pressure.[78] The conventional unit
cell of Cu–TDPAT contains 48 coppercations: 24 of them compose
12 double open metal sites, while the remaining 24 atoms compose 24
single open metal sites, with a conformation very similar to the OMS
of HKUST-1. Due to the large dimension of the unit cell (960 atoms),
the crystal is too big to perform a DFT calculation with an accuracy
comparable with our previous calculation on HKUST-1. Consequently,
we employed the extended charge equilibration (EQeq) method[79] to compute the partial charges of the framework.
This method is able to self-consistently compute point charges for
MOFs, with results very similar to the charges obtained by fitting
the electrostatic potential from a quantum calculation, e.g., REPEAT.
HKUST-1 itself was successfully tested in the original paper presenting
the EQeq method.[79] Compared to the quantum
electrostatic potential fitting, this method is drastically faster
(a few minutes instead of hours for HKUST-1) and applicable to a
unit cell containing a large number of atoms, which is practically
forbidden to DFT calculations. The result obtained for the copper
paddle-wheel is consistent with our PBEsol calculation in HKUST-1.
Using the EQeq method the average point charges for Cu–TDPAT
are 0.905 and −0.398 for the copper and the carboxylicoxygen,
respectively, versus 0.914 and −0.57 for HKUST-1 computed using
REPEAT. With the new set of parameters, we compared the results of
the GCMC simulations to experimental data (Figure ).
Figure 10
Comparison of experimental[77] and simulated
adsorption of CO2 in Cu–TDPAT at 298 K using different
sets of parameters. Force field developed in this work is reported
as “UFF modified”, while UFF/UFF and UFF/TraPPE are
the conventionally used standard sets of parameters. In both plots
the uptake is converted to CO2 molecules per copper ratio,
and the equivalence to the number of double open metal sites (0.25
CO2/Cu) and the number of total open metal sites (0.75
CO2/Cu) is highlighted with a dotted line. Experimental
heat of desorption (black dots, right picture) has been computed through
the Virial–Langmuir method, while the simulated values (colored
lines) are computed from the guest molecules number fluctuation in
the GCMC simulation.
Comparison of experimental[77] and simulated
adsorption of CO2 in Cu–TDPAT at 298 K using different
sets of parameters. Force field developed in this work is reported
as “UFF modified”, while UFF/UFF and UFF/TraPPE are
the conventionally used standard sets of parameters. In both plots
the uptake is converted to CO2 molecules per copper ratio,
and the equivalence to the number of double open metal sites (0.25
CO2/Cu) and the number of total open metal sites (0.75
CO2/Cu) is highlighted with a dotted line. Experimental
heat of desorption (black dots, right picture) has been computed through
the Virial–Langmuir method, while the simulated values (colored
lines) are computed from the guest molecules number fluctuation in
the GCMC simulation.This comparison shows good agreement, as for HKUST-1, which
gives
us some confidence in the transferability of our force field to model
CO2 adsorption. Moreover, it becomes more evident how UFF/UFF
and UFF/TraPPE parametrizations do not capture the strong interaction
between CO2’s oxygen and copper.
Conclusions
In this work we have shown that the Cu–Cu
interaction in
copper paddle-wheel systems is the reason why DFT methods, even when
they include dispersion corrections, systematically underestimate
the interaction between CO2 and copper paddle-wheel motif.
Our calculations confirm the presence of the copper–coppercoupling, influencing the attraction of the CO2, and suggest
that the monocoppercluster Cu(formate)2 is not a realistic
model to describe this interaction.One thus needs an electronic
structure theory that properly describes
the Cu–Cu interaction, such as the ROS-MP2 wave function. We
show that if this interaction is included in our calculations, the
prediction of the binding energies is in better agreement with the
experimental data. To justify the choice of ROS-MP2 method, which
is equivalent to a (2,2) CASPT2 calculation, we performed a number
of multireference calculations over a variety of active spaces, basis
sets, and spin states. We concluded that the ROS-MP2 level of theory
is good enough to model the Cu2(formate)4–CO2 interaction.Using the ROS-MP2 results, we reparametrized
the UFF pairwise potential
to correctly model the interaction of CO2 with the open
metal site in HKUST-1, which was severely underestimated by conventional
force fields. The results obtained from our new force field agree
with experimental isotherms as well as with in situ PXRD studies,
which found the open metal site to be the strongest adsorption site
for CO2 rather than the small pore center site. The correction
proposed in this work acts in proximity of the open metal site, and
this local character of the correction terms allows us to transfer
the same parameters to other MOFs containing the copper paddle-wheel
motif.To test this transferability, we employed our force field
to model
the CO2 interaction with the “double” open
metal sites of Cu–TDPAT framework, and we showed a significant
improvement with respect to conventional UFF parameters in this case
as well. The modified set of parameters proposed makes it possible
now to accurately describe the adsorption behavior for this class
of MOFs. In this study we focused on CO2, but similar
effects can be expected for other polar molecules.
Authors: Arni Sturluson; Melanie T Huynh; Alec R Kaija; Caleb Laird; Sunghyun Yoon; Feier Hou; Zhenxing Feng; Christopher E Wilmer; Yamil J Colón; Yongchul G Chung; Daniel W Siderius; Cory M Simon Journal: Mol Simul Date: 2019 Impact factor: 2.178
Authors: Daniele Ongari; Peter G Boyd; Ozge Kadioglu; Amber K Mace; Seda Keskin; Berend Smit Journal: J Chem Theory Comput Date: 2018-12-04 Impact factor: 6.006