| Literature DB >> 28751926 |
Daniele Ongari1, Davide Tiana1, Samuel J Stoneburner2, Laura Gagliardi2, Berend Smit1.
Abstract
The copper paddle-wheel is the building unit of manyEntities:
Year: 2017 PMID: 28751926 PMCID: PMC5523115 DOI: 10.1021/acs.jpcc.7b02302
Source DB: PubMed Journal: J Phys Chem C Nanomater Interfaces ISSN: 1932-7447 Impact factor: 4.126
Figure 1Copper paddle-wheel structure is composed of two coppers atoms bridged though four dicarboxilate anions. Cu2(formate)4 (left) represents the simplest paddle-wheel geometry possible. Dicopper benzyl-1,2,3-trimetylcarboxylate, Cu2(BTC)4 (right), is the building unit of the HKUST-1 framework: each BTC has three caboxylate groups that allow creation of a three-dimensional network.
Figure 2Three different pores in HKUST-1 (left): big pore (blue), medium pore with open metal sites (green), and small pore (yellow). Characteristic sites of adsorption for CO2 (right): open metal site (blue), small pore window (green), small pore center (yellow), and large pore corner (purple).
Figure 3Comparison of experimental (295[14] and 303 K[31]) and simulated adsorption isotherms. TraPPE[58] Lennard–Jones parameters and charges are used for CO2–CO2 interactions. To compute the dispersion forces acting between CO2 guest molecules and the crystal, three commonly used approaches are compared. First, we used Lennard–Jones parameters from UFF[59] (Lorentz–Berthelot mixing rules). Then we used UFF/TraPPE and DREIDING/TraPPE parameters[60] (notation FFframework/FFadsorbate). The point charges for the framework atoms are extracted from a PBEsol DFT calculation using the REPEAT scheme;[61] in the Supporting Information we report the charges’ values and compare them with the values obtained by using Bader’s method.[62] The framework is assumed to be rigid in all simulations.
Interaction Energy (kJ/mol) between CO2 and HKUST-1 for Different Adsorption Sitesa
| method | open metal | window | center |
|---|---|---|---|
| FF (UFF/UFF) | –19.3 | –25.7 | –26.3 |
| FF (UFF/TraPPE) | –19.0 | –27.5 | –29.0 |
| FF (DREIDING/TraPPE) | –19.4 | –27.2 | –28.5 |
| DFT (vdW-DF2) | –22.1 | –30.2 | –26.3 |
| DFT (PBEsol) | –12.1 | –6.7 | –0.8 |
| DFT/CC (Grajciar et al.[ | –28.2 | –23.1 | –23.2 |
The open metal site in the apical position of the copper paddle-wheel, the window, and the center of small octahedral pores. Force field and periodic DFT calculations are compared. Results obtained with PBEsol show the evident inadequacy of pure DFT methods to model noncovalent interactions.
CO2 Open Metal Site Interaction Energies in HKUST-1 Computed with Different Dispersion-Corrected DFT Methods
| method | open metal site interaction |
|---|---|
| vdW-DF | –24.9 kJ/mol |
| vdW-DF2 | –22.1 kJ/mol |
| vdW-DF2+U | –21.4 kJ/mol |
| vdW-DF2-rev | –20.2 kJ/mol |
Figure 4Path representation of linear scans of CO2 interacting with Cu(formate)2 (left) and Cu2(formate)4 (right). Dotted line, along which the CO2 molecule is displaced, is perpendicular to the CuO4 plane.
Figure 5Interaction energy profile for the CO2–Cu(formate)2 linear scan: interaction energy is plotted as a function of the distance between the copper atom and the CO2 molecule’s oxygen.
Figure 6Interaction energy profile for the CO2–Cu2(formate)4 linear scan: interaction energy is plotted as a function of the distance between the CO2 molecule’s oxygen and the closest copper.
Energy of Interaction (kJ/mol) between Cu2(formate)4 and CO2 in Linear and Tilted Conformationa
| method | linear CO2 interaction energy (kJ/mol) | Cu–O distance (Å) | tilted CO2 interaction energy (kJ/mol) | Cu–O distance (Å) | Cu–O–O angle (deg) |
|---|---|---|---|---|---|
| FF(UFF/UFF) | –13.0 | 2.5 | –14.3 | 2.5 | 127.4° |
| ROS-MP2/cc-pVTZ | –18.2 (−24.5) | 2.4 | –22.9 (−31.3) | (M06-L opt) | (M06-L opt) |
| ROS-MP2/ANO-RCC(BS2) | –20.4 (−38.0) | 2.4 | –24.8 (−43.3) | (M06-L opt) | (M06-L opt) |
| ROS-MP2/aug-cc-pVTZ | –21.6 (−27.1) | 2.4 | –27.2 (−33.1) | (M06-L opt) | (M06-L opt) |
| M06/aug-cc-pVTZ | –15.2 (−17.7) | 2.4 | –21.9 (−25.3) | 2.4 | 114.5° |
| M06-L/aug-cc-pVTZ | –15.8 (−18.6) | 2.4 | –23.3 (−26.0) | 2.4 | 115.9° |
| vdW-DF2/cutof | –12.5 | 2.6 | –18.4 | 2.6 | 109.9° |
For all calculations that employ Gaussian basis functions, the energies obtained without counterpoise correction are reported in parentheses. ROS-MP2 calculations without augmented basis function are included to show the variability due to their exclusion in computing interactions.[70] ROS-MP2/ANO-RCC calculations are also compared with CASPT2 results in section : for consistency we used the same basis set as BS2, with triple-ζ quality plus polarization on Cu, O, and C atoms and double-ζ quality plus polarization on H atoms.
Figure 7Two molecular orbitals MO1 (a) and MO2 (b), in the tilted dicopper system at equilibrium, with their occupation number in parentheses. In the linear system they look similar. Their occupation number is 1. They correspond to an overall configuration of 0.51 MO12 + 0.49 MO22.
CASPT2 Interaction Energies (kJ/mol) between Cu2(formate)4 and CO2 in Linear and Tilted Conformations for Different Active Spaces and Different Basis Sets for the Singlet Ground Statea
| configuration | active space | BS1 | BS2 | BS3 |
|---|---|---|---|---|
| linear | (2,2) | –15.0 (−43.2) | –18.7 (−33.5) | –20.2 (−31.7) |
| linear | (10,10) | –14.8 (−46.6) | –18.6 (−36.8) | –20.1 (−35.0) |
| tilted | (2,2) | –17.7 (−49.3) | –23.5 (−40.0) | –25.8 (−39.6) |
| tilted | (10,10) | –15.8 (−51.1) | –21.8 (−41.7) | –23.9 (−41.1) |
The distance between CO2 and copper is 2.4 Å for both the linear and the tilted conformations. Values include counterpoise correction. Values without counterpoise correction are in parentheses.
Figure 8Comparison between the experimental[31] and the simulated isotherms for CO2 inside HKUST-1 at 303 K. Modified UFF force field is obtained by fitting the Cu–O potential on ROS-MP2 calculations.
Figure 9CO2 molecule adsorbed in the double open metal site of Cu–TDPAT.
Figure 10Comparison of experimental[77] and simulated adsorption of CO2 in Cu–TDPAT at 298 K using different sets of parameters. Force field developed in this work is reported as “UFF modified”, while UFF/UFF and UFF/TraPPE are the conventionally used standard sets of parameters. In both plots the uptake is converted to CO2 molecules per copper ratio, and the equivalence to the number of double open metal sites (0.25 CO2/Cu) and the number of total open metal sites (0.75 CO2/Cu) is highlighted with a dotted line. Experimental heat of desorption (black dots, right picture) has been computed through the Virial–Langmuir method, while the simulated values (colored lines) are computed from the guest molecules number fluctuation in the GCMC simulation.