Literature DB >> 28750198

High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles.

Adam Conn1, Ullas V Pedmale2, Joanne Chory2, Saket Navlakha3.   

Abstract

Transport networks serve critical functions in biological and engineered systems, and yet their design requires trade-offs between competing objectives. Due to their sessile lifestyle, plants need to optimize their architecture to efficiently acquire and distribute resources while also minimizing costs in building infrastructure. To understand how plants resolve this design trade-off, we used high-precision three-dimensional laser scanning to map the architectures of tomato, tobacco, or sorghum plants grown in several environmental conditions and through multiple developmental time points, scanning in total 505 architectures from 37 plants. Using a graph-theoretic algorithm that we developed to evaluate design strategies, we find that plant architectures lie along the Pareto front between two simple length-based objectives-minimizing total branch length and minimizing nutrient transport distance-thereby conferring a selective fitness advantage for plant transport processes. The location along the Pareto front can distinguish among species and conditions, suggesting that during evolution, natural selection may employ common network design principles despite different optimization trade-offs.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D scanning; Pareto optimality; biological trade-offs; plant shoot architectures; transport network design

Mesh:

Year:  2017        PMID: 28750198     DOI: 10.1016/j.cels.2017.06.017

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  11 in total

1.  Travel in city road networks follows similar transport trade-off principles to neural and plant arbors.

Authors:  Jonathan Y Suen; Saket Navlakha
Journal:  J R Soc Interface       Date:  2019-05-31       Impact factor: 4.118

2.  Neural arbors are Pareto optimal.

Authors:  Arjun Chandrasekhar; Saket Navlakha
Journal:  Proc Biol Sci       Date:  2019-05-15       Impact factor: 5.349

3.  Machine Learning Approaches to Improve Three Basic Plant Phenotyping Tasks Using Three-Dimensional Point Clouds.

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Journal:  Plant Physiol       Date:  2019-10-07       Impact factor: 8.340

4.  PSegNet: Simultaneous Semantic and Instance Segmentation for Point Clouds of Plants.

Authors:  Dawei Li; Jinsheng Li; Shiyu Xiang; Anqi Pan
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Review 5.  Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.

Authors:  Xi Zhang; Yi Man; Xiaohong Zhuang; Jinbo Shen; Yi Zhang; Yaning Cui; Meng Yu; Jingjing Xing; Guangchao Wang; Na Lian; Zijian Hu; Lingyu Ma; Weiwei Shen; Shunyao Yang; Huimin Xu; Jiahui Bian; Yanping Jing; Xiaojuan Li; Ruili Li; Tonglin Mao; Yuling Jiao; Haiyun Ren; Jinxing Lin
Journal:  Sci China Life Sci       Date:  2021-03-12       Impact factor: 6.038

6.  The Quantitative Genetic Control of Root Architecture in Maize.

Authors:  Adam L Bray; Christopher N Topp
Journal:  Plant Cell Physiol       Date:  2018-10-01       Impact factor: 4.927

7.  Branching principles of animal and plant networks identified by combining extensive data, machine learning and modelling.

Authors:  Alexander B Brummer; Panagiotis Lymperopoulos; Jocelyn Shen; Elif Tekin; Lisa P Bentley; Vanessa Buzzard; Andrew Gray; Imma Oliveras; Brian J Enquist; Van M Savage
Journal:  J R Soc Interface       Date:  2021-01-06       Impact factor: 4.118

8.  Better tired than lost: Turtle ant trail networks favor coherence over short edges.

Authors:  Arjun Chandrasekhar; James A R Marshall; Cortnea Austin; Saket Navlakha; Deborah M Gordon
Journal:  PLoS Comput Biol       Date:  2021-10-21       Impact factor: 4.475

Review 9.  Network-based approaches to quantify multicellular development.

Authors:  Matthew D B Jackson; Salva Duran-Nebreda; George W Bassel
Journal:  J R Soc Interface       Date:  2017-10-11       Impact factor: 4.118

10.  Network trade-offs and homeostasis in Arabidopsis shoot architectures.

Authors:  Adam Conn; Arjun Chandrasekhar; Martin van Rongen; Ottoline Leyser; Joanne Chory; Saket Navlakha
Journal:  PLoS Comput Biol       Date:  2019-09-11       Impact factor: 4.475

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