Literature DB >> 33402023

Branching principles of animal and plant networks identified by combining extensive data, machine learning and modelling.

Alexander B Brummer1,2,3, Panagiotis Lymperopoulos4, Jocelyn Shen5, Elif Tekin1,3, Lisa P Bentley6, Vanessa Buzzard7, Andrew Gray8, Imma Oliveras9, Brian J Enquist8,10, Van M Savage1,2,3,10.   

Abstract

Branching in vascular networks and in overall organismic form is one of the most common and ancient features of multicellular plants, fungi and animals. By combining machine-learning techniques with new theory that relates vascular form to metabolic function, we enable novel classification of diverse branching networks-mouse lung, human head and torso, angiosperm and gymnosperm plants. We find that ratios of limb radii-which dictate essential biologic functions related to resource transport and supply-are best at distinguishing branching networks. We also show how variation in vascular and branching geometry persists despite observing a convergent relationship across organisms for how metabolic rate depends on body mass.

Entities:  

Keywords:  branching networks; machine learning; metabolic scaling; vascular biology

Mesh:

Year:  2021        PMID: 33402023      PMCID: PMC7879751          DOI: 10.1098/rsif.2020.0624

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  41 in total

Review 1.  Plant-PET Scans: In Vivo Mapping of Xylem and Phloem Functioning.

Authors:  Michiel Hubeau; Kathy Steppe
Journal:  Trends Plant Sci       Date:  2015-10       Impact factor: 18.313

2.  Deviation from symmetrically self-similar branching in trees predicts altered hydraulics, mechanics, light interception and metabolic scaling.

Authors:  Duncan D Smith; John S Sperry; Brian J Enquist; Van M Savage; Katherine A McCulloh; Lisa P Bentley
Journal:  New Phytol       Date:  2013-09-17       Impact factor: 10.151

3.  An empirical assessment of tree branching networks and implications for plant allometric scaling models.

Authors:  Lisa Patrick Bentley; James C Stegen; Van M Savage; Duncan D Smith; Erica I von Allmen; John S Sperry; Peter B Reich; Brian J Enquist
Journal:  Ecol Lett       Date:  2013-06-26       Impact factor: 9.492

Review 4.  Testing the metabolic theory of ecology.

Authors:  Charles A Price; Joshua S Weitz; Van M Savage; James Stegen; Andrew Clarke; David A Coomes; Peter S Dodds; Rampal S Etienne; Andrew J Kerkhoff; Katherine McCulloh; Karl J Niklas; Han Olff; Nathan G Swenson; Jerome Chave
Journal:  Ecol Lett       Date:  2012-08-30       Impact factor: 9.492

5.  Vasculature surrounding a nodule: A novel lung cancer biomarker.

Authors:  Xiaohua Wang; Joseph K Leader; Renwei Wang; David Wilson; James Herman; Jian-Min Yuan; Jiantao Pu
Journal:  Lung Cancer       Date:  2017-10-27       Impact factor: 5.705

6.  Fish reproductive-energy output increases disproportionately with body size.

Authors:  Diego R Barneche; D Ross Robertson; Craig R White; Dustin J Marshall
Journal:  Science       Date:  2018-05-11       Impact factor: 47.728

Review 7.  Normalization of tumor vasculature: an emerging concept in antiangiogenic therapy.

Authors:  Rakesh K Jain
Journal:  Science       Date:  2005-01-07       Impact factor: 47.728

Review 8.  Blood vessel segmentation algorithms - Review of methods, datasets and evaluation metrics.

Authors:  Sara Moccia; Elena De Momi; Sara El Hadji; Leonardo S Mattos
Journal:  Comput Methods Programs Biomed       Date:  2018-02-10       Impact factor: 5.428

9.  Vascularization pattern after ischemic stroke is different in control versus diabetic rats: relevance to stroke recovery.

Authors:  Roshini Prakash; Weiguo Li; Zhi Qu; Maribeth A Johnson; Susan C Fagan; Adviye Ergul
Journal:  Stroke       Date:  2013-08-06       Impact factor: 7.914

10.  Nonsymmetrical bifurcations in arterial branching.

Authors:  M Zamir
Journal:  J Gen Physiol       Date:  1978-12       Impact factor: 4.086

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