Literature DB >> 28745936

5-hydroxymethylcytosine in DNA repair: A new player or a red herring?

Omar L Kantidze1,2, Sergey V Razin1,2.   

Abstract

Active DNA demethylation performed by ten-eleven translocation (TET) enzymes produces 5-hydroxymethylcytosines, 5-formylcytosines, and 5-carboxylcytosines. Recent observations suggest that 5-hydroxymethylcytosine is a stable epigenetic mark rather than merely an intermediate of DNA demethylation. However, the clear functional role of this new epigenetic player is elusive. The contribution of 5-hydroxymethylation to DNA repair is being discussed currently. Recently, Jiang and colleagues have demonstrated that DNA damage response-activated ATR kinase phosphorylates TET3 in mammalian cells and promotes DNA demethylation and 5-hydroxymethylcytosine accumulation. Moreover, TET3 catalytic activity is important for proper DNA repair and cell survival. Here, we discuss recent studies on the potential role of 5-hydroxymethylation in DNA repair and genome integrity maintenance.

Entities:  

Keywords:  5-hydroxymethylcytosine; 5hmC; DNA demethylation; DNA methylation; DNA repair; TET; ten-eleven translocation

Mesh:

Substances:

Year:  2017        PMID: 28745936      PMCID: PMC5584847          DOI: 10.1080/15384101.2017.1346761

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  34 in total

Review 1.  Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond.

Authors:  Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

2.  Alteration in 5-hydroxymethylcytosine-mediated epigenetic regulation leads to Purkinje cell vulnerability in ATM deficiency.

Authors:  Dewei Jiang; Ying Zhang; Ronald P Hart; Jianmin Chen; Karl Herrup; Jiali Li
Journal:  Brain       Date:  2015-10-27       Impact factor: 13.501

Review 3.  DNA demethylation pathways: Additional players and regulators.

Authors:  Matthias Bochtler; Agnieszka Kolano; Guo-Liang Xu
Journal:  Bioessays       Date:  2016-11-16       Impact factor: 4.345

4.  TET3-mediated DNA oxidation promotes ATR-dependent DNA damage response.

Authors:  Dewei Jiang; Shu Wei; Fei Chen; Ying Zhang; Jiali Li
Journal:  EMBO Rep       Date:  2017-03-21       Impact factor: 8.807

5.  Methylation protects cytidines from AID-mediated deamination.

Authors:  Mani Larijani; Darina Frieder; Timothy M Sonbuchner; Ronda Bransteitter; Myron F Goodman; Eric E Bouhassira; Matthew D Scharff; Alberto Martin
Journal:  Mol Immunol       Date:  2005-03       Impact factor: 4.407

6.  Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms.

Authors:  Timothy Alexander Hore; Ferdinand von Meyenn; Mirunalini Ravichandran; Martin Bachman; Gabriella Ficz; David Oxley; Fátima Santos; Shankar Balasubramanian; Tomasz P Jurkowski; Wolf Reik
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

7.  DNA methylation inhibitor 5-Aza-2'-deoxycytidine induces reversible genome-wide DNA damage that is distinctly influenced by DNA methyltransferases 1 and 3B.

Authors:  Stela S Palii; Beth O Van Emburgh; Umesh T Sankpal; Kevin D Brown; Keith D Robertson
Journal:  Mol Cell Biol       Date:  2007-11-08       Impact factor: 4.272

Review 8.  DNA methyltransferases, DNA damage repair, and cancer.

Authors:  Bilian Jin; Keith D Robertson
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 9.  Whole genome DNA methylation: beyond genes silencing.

Authors:  Roberto Tirado-Magallanes; Khadija Rebbani; Ricky Lim; Sriharsa Pradhan; Touati Benoukraf
Journal:  Oncotarget       Date:  2017-01-17

10.  Zebrafish AID is capable of deaminating methylated deoxycytidines.

Authors:  Hala Abdouni; Justin J King; Mussa Suliman; Matthew Quinlan; Heather Fifield; Mani Larijani
Journal:  Nucleic Acids Res       Date:  2013-04-12       Impact factor: 16.971

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  8 in total

Review 1.  Molecular Mechanisms of Arsenic-Induced Disruption of DNA Repair.

Authors:  Lok Ming Tam; Nathan E Price; Yinsheng Wang
Journal:  Chem Res Toxicol       Date:  2020-02-07       Impact factor: 3.739

2.  X-ray irradiation induces subtle changes in the genome-wide distribution of DNA hydroxymethylation with opposing trends in genic and intergenic regions.

Authors:  Benjamin V Becker; Leonhard Kaatsch; Richard Obermair; Gerrit Schrock; Matthias Port; Reinhard Ullmann
Journal:  Epigenetics       Date:  2019-01-29       Impact factor: 4.528

Review 3.  Epigenetic reprogramming in metabolic disorders: nutritional factors and beyond.

Authors:  Zhiyong Cheng; Louise Zheng; Fabio A Almeida
Journal:  J Nutr Biochem       Date:  2017-10-23       Impact factor: 6.048

Review 4.  Around and beyond 53BP1 Nuclear Bodies.

Authors:  Anne Fernandez-Vidal; Julien Vignard; Gladys Mirey
Journal:  Int J Mol Sci       Date:  2017-12-05       Impact factor: 5.923

Review 5.  The Progress of Methylation Regulation in Gene Expression of Cervical Cancer.

Authors:  Chunyang Feng; Junxue Dong; Weiqin Chang; Manhua Cui; Tianmin Xu
Journal:  Int J Genomics       Date:  2018-04-16       Impact factor: 2.326

6.  Genome-wide DNA methylation and hydroxymethylation analysis reveal human menstrual blood-derived stem cells inhibit hepatocellular carcinoma growth through oncogenic pathway suppression via regulating 5-hmC in enhancer elements.

Authors:  Yichen Wu; Xin Chen; Yongjia Zhao; Yanling Wang; Yifei Li; Charlie Xiang
Journal:  Stem Cell Res Ther       Date:  2019-05-31       Impact factor: 6.832

7.  L-Ascorbic Acid in the Epigenetic Regulation of Cancer Development and Stem Cell Reprogramming.

Authors:  A P Kovina; N V Petrova; S V Razin; O L Kantidze
Journal:  Acta Naturae       Date:  2020 Oct-Dec       Impact factor: 1.845

Review 8.  Environmental Epigenetics and Genome Flexibility: Focus on 5-Hydroxymethylcytosine.

Authors:  Olga A Efimova; Alla S Koltsova; Mikhail I Krapivin; Andrei V Tikhonov; Anna A Pendina
Journal:  Int J Mol Sci       Date:  2020-05-02       Impact factor: 5.923

  8 in total

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