Literature DB >> 28743753

Spatial gene drives and pushed genetic waves.

Hidenori Tanaka1,2, Howard A Stone3, David R Nelson1,4,5.   

Abstract

Gene drives have the potential to rapidly replace a harmful wild-type allele with a gene drive allele engineered to have desired functionalities. However, an accidental or premature release of a gene drive construct to the natural environment could damage an ecosystem irreversibly. Thus, it is important to understand the spatiotemporal consequences of the super-Mendelian population genetics before potential applications. Here, we use a reaction-diffusion model for sexually reproducing diploid organisms to study how a locally introduced gene drive allele spreads to replace the wild-type allele, although it possesses a selective disadvantage s > 0. Using methods developed by Barton and collaborators, we show that socially responsible gene drives require 0.5 < s < 0.697, a rather narrow range. In this "pushed wave" regime, the spatial spreading of gene drives will be initiated only when the initial frequency distribution is above a threshold profile called "critical propagule," which acts as a safeguard against accidental release. We also study how the spatial spread of the pushed wave can be stopped by making gene drives uniquely vulnerable ("sensitizing drive") in a way that is harmless for a wild-type allele. Finally, we show that appropriately sensitized drives in two dimensions can be stopped, even by imperfect barriers perforated by a series of gaps.

Keywords:  Fisher wave; bistable wave; gene drive

Mesh:

Year:  2017        PMID: 28743753      PMCID: PMC5559037          DOI: 10.1073/pnas.1705868114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Journal:  Phys Rev Lett       Date:  2014-04-01       Impact factor: 9.161

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-16       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-31       Impact factor: 11.205

Review 5.  Chromosome rearrangements for the control of insect pests.

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Journal:  Science       Date:  1972-05-26       Impact factor: 47.728

6.  Competition and cooperation in one-dimensional stepping-stone models.

Authors:  K S Korolev; David R Nelson
Journal:  Phys Rev Lett       Date:  2011-08-19       Impact factor: 9.161

7.  Genetic drift at expanding frontiers promotes gene segregation.

Authors:  Oskar Hallatschek; Pascal Hersen; Sharad Ramanathan; David R Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-04       Impact factor: 11.205

8.  RNA-programmed genome editing in human cells.

Authors:  Martin Jinek; Alexandra East; Aaron Cheng; Steven Lin; Enbo Ma; Jennifer Doudna
Journal:  Elife       Date:  2013-01-29       Impact factor: 8.140

Review 9.  Concerning RNA-guided gene drives for the alteration of wild populations.

Authors:  Kevin M Esvelt; Andrea L Smidler; Flaminia Catteruccia; George M Church
Journal:  Elife       Date:  2014-07-17       Impact factor: 8.140

10.  Safeguarding CRISPR-Cas9 gene drives in yeast.

Authors:  James E DiCarlo; Alejandro Chavez; Sven L Dietz; Kevin M Esvelt; George M Church
Journal:  Nat Biotechnol       Date:  2015-11-16       Impact factor: 54.908

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  16 in total

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Authors:  Stephanie James; Frank H Collins; Philip A Welkhoff; Claudia Emerson; H Charles J Godfray; Michael Gottlieb; Brian Greenwood; Steve W Lindsay; Charles M Mbogo; Fredros O Okumu; Hector Quemada; Moussa Savadogo; Jerome A Singh; Karen H Tountas; Yeya T Touré
Journal:  Am J Trop Med Hyg       Date:  2018-06       Impact factor: 2.345

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Authors:  Michael Manhart; Bharat V Adkar; Eugene I Shakhnovich
Journal:  Proc Biol Sci       Date:  2018-02-14       Impact factor: 5.349

3.  Antagonism between killer yeast strains as an experimental model for biological nucleation dynamics.

Authors:  Andrea Giometto; David R Nelson; Andrew W Murray
Journal:  Elife       Date:  2021-12-06       Impact factor: 8.713

4.  Dynamics of diffusive cell signaling relays.

Authors:  Paul B Dieterle; Jiseon Min; Daniel Irimia; Ariel Amir
Journal:  Elife       Date:  2020-12-04       Impact factor: 8.140

Review 5.  Chemical waves in cell and developmental biology.

Authors:  Victoria E Deneke; Stefano Di Talia
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6.  The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps.

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7.  Can a Population Targeted by a CRISPR-Based Homing Gene Drive Be Rescued?

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8.  Current CRISPR gene drive systems are likely to be highly invasive in wild populations.

Authors:  Charleston Noble; Ben Adlam; George M Church; Kevin M Esvelt; Martin A Nowak
Journal:  Elife       Date:  2018-06-19       Impact factor: 8.140

9.  Spatial structure undermines parasite suppression by gene drive cargo.

Authors:  James J Bull; Christopher H Remien; Richard Gomulkiewicz; Stephen M Krone
Journal:  PeerJ       Date:  2019-10-29       Impact factor: 2.984

10.  Mathematical modeling of self-contained CRISPR gene drive reversal systems.

Authors:  Matthew G Heffel; Gregory C Finnigan
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

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