Literature DB >> 28742964

Conformational Flexibility and Self-Association of Fibrinogen in Concentrated Solutions.

Yuriy F Zuev1,2, Rustem I Litvinov2,3, Alexander E Sitnitsky1, Bulat Z Idiyatullin1, Dilyafruz R Bakirova1, Dennis K Galanakis4, Artem Zhmurov5, Valeri Barsegov6,5, John W Weisel3.   

Abstract

We studied the hydrodynamic behavior of fibrinogen, a blood plasma protein involved in blood clotting, in a broad 0.3-60 mg/mL range of concentration and 5-42 °C temperature using pulsed-field gradient 1H NMR-diffusometry. Arrhenius plots revealed the activation energy for fibrinogen diffusion Ed = 21.3 kJ/mol at 1.4 mg/mL and 28.4 kJ/mol at 38 mg/mL. We found a dramatic slowdown in fibrinogen self-diffusion with concentration beginning at 1.7-3.4 mg/mL, which deviated from the standard hard-particle behavior, suggesting a remarkable intermolecular entanglement. This concentration dependence was observed regardless of the absence or presence of the GPRP peptide (inhibitor of fibrin polymerization), and also in samples free of fibrin oligomers. By contrast, diffusivity of fibrinogen variant I-9 with truncated C-terminal portions of the Aα chains was much less concentration-dependent, indicating the importance of intermolecular linkages formed by the αC regions. Theoretical models combined with all-atom molecular dynamics simulations revealed partially bent fibrinogen solution conformations that interpolate between a flexible chain and a rigid rod observed in the crystal. The results obtained illuminate the important role of the αC regions in modulating the fibrinogen molecular shape through formation of weak intermolecular linkages that control the bulk properties of fibrinogen solutions.

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Year:  2017        PMID: 28742964     DOI: 10.1021/acs.jpcb.7b05654

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves.

Authors:  Farkhad Maksudov; Ali Daraei; Anuj Sesha; Kenneth A Marx; Martin Guthold; Valeri Barsegov
Journal:  Acta Biomater       Date:  2021-10-02       Impact factor: 8.947

2.  The Native Monomer of Bacillus Pumilus Ribonuclease Does Not Exist Extracellularly.

Authors:  Olga Ilinskaya; Vera Ulyanova; Irina Lisevich; Elena Dudkina; Nataliya Zakharchenko; Alexandra Kusova; Dzhigangir Faizullin; Yuriy Zuev
Journal:  Biomed Res Int       Date:  2018-10-08       Impact factor: 3.411

3.  Targeting Human Thrombus by Liposomes Modified with Anti-Fibrin Protein Binders.

Authors:  Hana Petroková; Josef Mašek; Milan Kuchař; Andrea Vítečková Wünschová; Jana Štikarová; Eliška Bartheldyová; Pavel Kulich; František Hubatka; Jan Kotouček; Pavlína Turánek Knotigová; Eva Vohlídalová; Renata Héžová; Eliška Mašková; Stuart Macaulay; Jan Evangelista Dyr; Milan Raška; Robert Mikulík; Petr Malý; Jaroslav Turánek
Journal:  Pharmaceutics       Date:  2019-12-02       Impact factor: 6.321

4.  Impact of posttranslational modifications on atomistic structure of fibrinogen.

Authors:  Žofie Sovová; Jana Štikarová; Jiřina Kaufmanová; Pavel Májek; Jiří Suttnar; Pavel Šácha; Martin Malý; Jan E Dyr
Journal:  PLoS One       Date:  2020-01-29       Impact factor: 3.240

Review 5.  Effect of Protein-Protein Interactions on Translational Diffusion of Spheroidal Proteins.

Authors:  Aleksandra M Kusova; Aleksandr E Sitnitsky; Vladimir N Uversky; Yuriy F Zuev
Journal:  Int J Mol Sci       Date:  2022-08-17       Impact factor: 6.208

6.  Tracking oxidation-induced alterations in fibrin clot formation by NMR-based methods.

Authors:  Wai-Hoe Lau; Nathan J White; Tsin-Wen Yeo; Russell L Gruen; Konstantin Pervushin
Journal:  Sci Rep       Date:  2021-08-03       Impact factor: 4.379

  6 in total

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