Literature DB >> 28739220

Beyond Native Cas9: Manipulating Genomic Information and Function.

Hitoshi Mitsunobu1, Jun Teramoto1, Keiji Nishida1, Akihiko Kondo2.   

Abstract

Clustered regularly interspaced short palindromic repeats (CRISPR)-mediated manipulation of genomic information is becoming more versatile by combining nuclease-deficient CRISPR systems with a wide variety of effectors including base-editing deaminases, transcriptional regulators, and epigenetic modifiers. The programmable binding ability of CRISPR systems is essential when the systems are employed as targeting domains to recruit the effectors to specific genomic loci. The discovery of a variety of Cas9 orthologs and engineered variants enables high-fidelity genome editing and a wider selection of genomic targets, and CRISPR-mediated deaminases enable more precise and predictable genome editing compared with CRISPR nuclease-based editing. Finally, combining transcriptional regulators with CRISPR systems can control expression of specific genes in a genome. Some applications and future challenges of CRISPR-derived tools are also discussed.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CRISPR/Cas system; dCas9; deaminase; gene regulation; nCas9

Mesh:

Substances:

Year:  2017        PMID: 28739220     DOI: 10.1016/j.tibtech.2017.06.004

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  21 in total

Review 1.  Targeting cancer epigenetics with CRISPR-dCAS9: Principles and prospects.

Authors:  Mohammad Mijanur Rahman; Trygve O Tollefsbol
Journal:  Methods       Date:  2020-04-18       Impact factor: 3.608

Review 2.  Exploiting DNA Endonucleases to Advance Mechanisms of DNA Repair.

Authors:  Marlo K Thompson; Robert W Sobol; Aishwarya Prakash
Journal:  Biology (Basel)       Date:  2021-06-14

3.  Encounters between Cas9/dCas9 and G-Quadruplexes: Implications for Transcription Regulation and Cas9-Mediated DNA Cleavage.

Authors:  Mohammed Enamul Hoque; Golam Mustafa; Soumitra Basu; Hamza Balci
Journal:  ACS Synth Biol       Date:  2021-05-10       Impact factor: 5.249

4.  A split protease-E. coli ClpXP system quantifies protein-protein interactions in Escherichia coli cells.

Authors:  Shengchen Wang; Faying Zhang; Meng Mei; Ting Wang; Yueli Yun; Shihui Yang; Guimin Zhang; Li Yi
Journal:  Commun Biol       Date:  2021-07-06

5.  Streamlined ex vivo and in vivo genome editing in mouse embryos using recombinant adeno-associated viruses.

Authors:  Yeonsoo Yoon; Dan Wang; Phillip W L Tai; Joy Riley; Guangping Gao; Jaime A Rivera-Pérez
Journal:  Nat Commun       Date:  2018-01-29       Impact factor: 14.919

Review 6.  History of genome editing in yeast.

Authors:  Marcin G Fraczek; Samina Naseeb; Daniela Delneri
Journal:  Yeast       Date:  2018-02-26       Impact factor: 3.239

Review 7.  Design principles for nuclease-deficient CRISPR-based transcriptional regulators.

Authors:  Michael K Jensen
Journal:  FEMS Yeast Res       Date:  2018-06-01       Impact factor: 2.796

8.  Decoding the chromatin proteome of a single genomic locus by DNA sequencing.

Authors:  Tessy Korthout; Deepani W Poramba-Liyanage; Ila van Kruijsbergen; Kitty F Verzijlbergen; Frank P A van Gemert; Tibor van Welsem; Fred van Leeuwen
Journal:  PLoS Biol       Date:  2018-07-13       Impact factor: 8.029

9.  Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.

Authors:  Johnny H Hu; Shannon M Miller; Maarten H Geurts; Weixin Tang; Liwei Chen; Ning Sun; Christina M Zeina; Xue Gao; Holly A Rees; Zhi Lin; David R Liu
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

Review 10.  Pipeline for the Generation and Characterization of Transgenic Human Pluripotent Stem Cells Using the CRISPR/Cas9 Technology.

Authors:  Joffrey Mianné; Chloé Bourguignon; Chloé Nguyen Van; Mathieu Fieldès; Amel Nasri; Said Assou; John De Vos
Journal:  Cells       Date:  2020-05-25       Impact factor: 6.600

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