Literature DB >> 28736471

Comparison of Multi-Fiber Reproducibility of PAS-MRI and Q-ball With Empirical Multiple b-Value HARDI.

Vishwesh Nath1, Kurt G Schilling2, Justin A Blaber1,3, Zhaohua Ding2, Adam W Anderson2, Bennett A Landman1,3,2.   

Abstract

Crossing fibers are prevalent in human brains and a subject of intense interest for neuroscience. Diffusion tensor imaging (DTI) can resolve tissue orientation but is blind to crossing fibers. Many advanced diffusion-weighted magnetic resolution imaging (MRI) approaches have been presented to extract crossing-fibers from high angular resolution diffusion imaging (HARDI), but the relative sensitivity and specificity of approaches remains unclear. Here, we examine two leading approaches (PAS and q-ball) in the context of a large-scale, single subject reproducibility study. A single healthy individual was scanned 11 times with 96 diffusion weighted directions and 10 reference volumes for each of five b-values (1000, 1500, 2000, 2500, 3000 s/mm2) for a total of 5830 volumes (over the course of three sessions). We examined the reproducibility of the number of fibers per voxel, volume fraction, and crossing-fiber angles. For each method, we determined the minimum resolvable angle for each acquisition. Reproducibility of fiber counts per voxel was generally high (~80% consensus for PAS and ~70% for q-ball), but there was substantial bias between individual repetitions and model estimated with all data (~10% lower consensus for PAS and ~15% lower for q-ball). Both PAS and q-ball predominantly discovered fibers crossing at near 90 degrees, but reproducibility was higher for PAS across most measures. Within voxels with low anisotropy, q-ball finds more intra-voxel structure; meanwhile, PAS resolves multiple fibers at greater than 75 degrees for more voxels. These results can inform researchers when deciding between HARDI approaches or interpreting findings across studies.

Entities:  

Keywords:  Angular Error; Crossing Fiber; HARDI; Minimum Resolvable Angle; PAS-MRI; Q-ball; Reproducibility

Year:  2017        PMID: 28736471      PMCID: PMC5521278          DOI: 10.1117/12.2254736

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  14 in total

1.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
Journal:  Med Image Anal       Date:  2001-06       Impact factor: 8.545

2.  How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging.

Authors:  Jesper L R Andersson; Stefan Skare; John Ashburner
Journal:  Neuroimage       Date:  2003-10       Impact factor: 6.556

3.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

4.  Measurement of fiber orientation distributions using high angular resolution diffusion imaging.

Authors:  Adam W Anderson
Journal:  Magn Reson Med       Date:  2005-11       Impact factor: 4.668

5.  Maximum entropy spherical deconvolution for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Inf Process Med Imaging       Date:  2005

6.  Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT).

Authors:  Evren Ozarslan; Timothy M Shepherd; Baba C Vemuri; Stephen J Blackband; Thomas H Mareci
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

7.  Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T.

Authors:  Jonathan A D Farrell; Bennett A Landman; Craig K Jones; Seth A Smith; Jerry L Prince; Peter C M van Zijl; Susumu Mori
Journal:  J Magn Reson Imaging       Date:  2007-09       Impact factor: 4.813

8.  Regularized, fast, and robust analytical Q-ball imaging.

Authors:  Maxime Descoteaux; Elaine Angelino; Shaun Fitzgibbons; Rachid Deriche
Journal:  Magn Reson Med       Date:  2007-09       Impact factor: 4.668

9.  Reproducibility and consistency of evaluation techniques for HARDI data.

Authors:  Kamil Gorczewski; Sarah Mang; Uwe Klose
Journal:  MAGMA       Date:  2008-09-23       Impact factor: 2.310

10.  Evaluation of the accuracy and angular resolution of q-ball imaging.

Authors:  Kuan-Hung Cho; Chun-Hung Yeh; Jacques-Donald Tournier; Yi-Ping Chao; Jyh-Horng Chen; Ching-Po Lin
Journal:  Neuroimage       Date:  2008-04-09       Impact factor: 6.556

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  4 in total

1.  Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.

Authors:  Vishwesh Nath; Kurt G Schilling; Prasanna Parvathaneni; Yuankai Huo; Justin A Blaber; Allison E Hainline; Muhamed Barakovic; David Romascano; Jonathan Rafael-Patino; Matteo Frigo; Gabriel Girard; Jean-Philippe Thiran; Alessandro Daducci; Matt Rowe; Paulo Rodrigues; Vesna Prčkovska; Dogu B Aydogan; Wei Sun; Yonggang Shi; William A Parker; Abdol A Ould Ismail; Ragini Verma; Ryan P Cabeen; Arthur W Toga; Allen T Newton; Jakob Wasserthal; Peter Neher; Klaus Maier-Hein; Giovanni Savini; Fulvia Palesi; Enrico Kaden; Ye Wu; Jianzhong He; Yuanjing Feng; Michael Paquette; Francois Rheault; Jasmeen Sidhu; Catherine Lebel; Alexander Leemans; Maxime Descoteaux; Tim B Dyrby; Hakmook Kang; Bennett A Landman
Journal:  J Magn Reson Imaging       Date:  2019-06-09       Impact factor: 4.813

2.  A deep learning approach to estimation of subject-level bias and variance in high angular resolution diffusion imaging.

Authors:  Allison E Hainline; Vishwesh Nath; Prasanna Parvathaneni; Kurt G Schilling; Justin A Blaber; Adam W Anderson; Hakmook Kang; Bennett A Landman
Journal:  Magn Reson Imaging       Date:  2019-03-26       Impact factor: 2.546

3.  Inter-Scanner Harmonization of High Angular Resolution DW-MRI using Null Space Deep Learning.

Authors:  Vishwesh Nath; Prasanna Parvathaneni; Colin B Hansen; Allison E Hainline; Camilo Bermudez; Samuel Remedios; Justin A Blaber; Kurt G Schilling; Ilwoo Lyu; Vaibhav Janve; Yurui Gao; Iwona Stepniewska; Baxter P Rogers; Allen T Newton; L Taylor Davis; Jeff Luci; Adam W Anderson; Bennett A Landman
Journal:  Lect Notes Monogr Ser       Date:  2019-05-03

4.  Harmonizing 1.5T/3T Diffusion Weighted MRI through Development of Deep Learning Stabilized Microarchitecture Estimators.

Authors:  Vishwesh Nath; Samuel Remedios; Prasanna Parvathaneni; Colin B Hansen; Roza G Bayrak; Camilo Bermudez; Justin A Blaber; Kurt G Schilling; Vaibhav A Janve; Yurui Gao; Yuankai Huo; Ilwoo Lyu; Owen Williams; Susan Resnick; Lori Beason-Held; Baxter P Rogers; Iwona Stepniewska; Adam W Anderson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15
  4 in total

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