Literature DB >> 2872918

Effects of the phenylalanine-22----leucine, glutamic acid-49----methionine, glycine-234----aspartic acid, and glycine-234----lysine mutations on the folding and stability of the alpha subunit of tryptophan synthase from Escherichia coli.

A M Beasty, M R Hurle, J T Manz, T Stackhouse, J J Onuffer, C R Matthews.   

Abstract

The effects of four single amino acid replacements on the stability and folding of the alpha subunit of tryptophan synthase from Escherichia coli have been investigated by ultraviolet differences spectroscopy. In previous studies [Miles, E. W., Yutani, K., & Ogasahara, K. (1982) Biochemistry 21, 2586], it had been shown that the urea-induced unfolding at pH 7.8, 25 degrees C, proceeds by the initial unfolding of the less stable carboxyl domain (residues 189-268) followed by the unfolding of the more stable amino domain (residues 1-188). The effects of the Phe-22----Leu, Glu-49----Met, Gly-234----Asp, and Gly-234----Lys mutants on the equilibrium unfolding process can all be understood in terms of the domain unfolding model. With the exception of the Glu-49----Met replacement, the effects on stability are small. In contrast, the effects of three of the four mutations on the kinetics of interconversion of the native form and one of the stable partially folded intermediates are dramatic. The results for the Phe-22----Leu and Gly-234----Asp mutations indicate that these residues play a key role in the rate-limiting step. The Glu-49----Met mutation increases the stability of the native form with respect to that of the intermediate but does not affect the rate-limiting step. The Gly-234----Lys mutation does not affect either the stability or the kinetics of folding for the transition between native and intermediate forms. The changes in stability calculated from the unfolding and refolding rate constants agree quantitatively with those obtained from the equilibrium data. When considered with the results from a previous study on the Gly-211----Glu replacement [Matthews, C. R., Crisanti, M. M., Manz, J. T., & Gepner G. L. (1983) Biochemistry 22, 1445], it can be concluded that the rate-limiting step in the conversion of the intermediate to the native conformation involves either domain association or some other type of molecule-wide phenomenon.

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Year:  1986        PMID: 2872918     DOI: 10.1021/bi00358a035

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  A model of the molten globule state from molecular dynamics simulations.

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2.  A tightly packed hydrophobic cluster directs the formation of an off-pathway sub-millisecond folding intermediate in the alpha subunit of tryptophan synthase, a TIM barrel protein.

Authors:  Ying Wu; Ramakrishna Vadrevu; Sagar Kathuria; Xiaoyan Yang; C Robert Matthews
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

3.  Intestinal fatty acid binding protein: a specific residue in one turn appears to stabilize the native structure and be responsible for slow refolding.

Authors:  K Kim; R Ramanathan; C Frieden
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

4.  Mutational analysis of the BPTI folding pathway: II. Effects of aromatic-->leucine substitutions on folding kinetics and thermodynamics.

Authors:  J X Zhang; D P Goldenberg
Journal:  Protein Sci       Date:  1997-07       Impact factor: 6.725

5.  Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit.

Authors:  K Yutani; K Ogasahara; T Tsujita; Y Sugino
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

Review 6.  Protein engineering. The design, synthesis and characterization of factitious proteins.

Authors:  W V Shaw
Journal:  Biochem J       Date:  1987-08-15       Impact factor: 3.857

7.  Surface point mutations that significantly alter the structure and stability of a protein's denatured state.

Authors:  C K Smith; Z Bu; K S Anderson; J M Sturtevant; D M Engelman; L Regan
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

8.  A folding pathway for betapep-4 peptide 33mer: from unfolded monomers and beta-sheet sandwich dimers to well-structured tetramers.

Authors:  K H Mayo; E Ilyina
Journal:  Protein Sci       Date:  1998-02       Impact factor: 6.725

9.  Mixed Macromolecular Crowding: A Protein and Solvent Perspective.

Authors:  Saikat Biswas; Jayanta Kundu; Sanjib K Mukherjee; Pramit Kumar Chowdhury
Journal:  ACS Omega       Date:  2018-04-19

10.  Pierced Lasso Bundles are a new class of knot-like motifs.

Authors:  Ellinor Haglund; Joanna I Sulkowska; Jeffrey K Noel; Heiko Lammert; José N Onuchic; Patricia A Jennings
Journal:  PLoS Comput Biol       Date:  2014-06-19       Impact factor: 4.475

  10 in total

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