Literature DB >> 28728966

Advances and perspectives in tissue clearing using CLARITY.

Kristian H Reveles Jensen1, Rune W Berg2.   

Abstract

CLARITY is a tissue clearing method, which enables immunostaining and imaging of large volumes for 3D-reconstruction. The method was initially time-consuming, expensive and relied on electrophoresis to remove lipids to make the tissue transparent. Since then several improvements and simplifications have emerged, such as passive clearing (PACT) and methods to improve tissue staining. Here, we review advances and compare current applications with the aim of highlighting needed improvements as well as aiding selection of the specific protocol for use in future investigations.
Copyright © 2017 Elsevier B.V. All rights reserved.

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Keywords:  1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide (PubChem CID: 15908); 2,2′-Thiodiethanol (PubChem CID: 5447); Acrylamide (PubChem CID: 6579); Biocytin; Brain; CLARITY; D-Sorbitol (PubChem CID: 5780); Diatrizoic acid (PubChem CID: 2140); Gylcerol (PubChem CID: 753); Histology; Immunohistochemistry; Iohexol (PubChem CID: 3730); Iomeprol-d3 (PubChem CID: 46781978); N,N,N’,N’-Tetrakis(2-hydroxypropyl)-ethylenediamine (amino alcohol, PubChem CID: 7615); Refractive index; Tissue clearing; Tracing; Virus; α-Thioglycerol (PubChem CID: 7291)

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Year:  2017        PMID: 28728966     DOI: 10.1016/j.jchemneu.2017.07.005

Source DB:  PubMed          Journal:  J Chem Neuroanat        ISSN: 0891-0618            Impact factor:   3.052


  18 in total

1.  Tissue Clearing and Its Application to Bone and Dental Tissues.

Authors:  D Jing; Y Yi; W Luo; S Zhang; Q Yuan; J Wang; E Lachika; Z Zhao; H Zhao
Journal:  J Dent Res       Date:  2019-04-22       Impact factor: 6.116

2.  Novel Passive Clearing Methods for the Rapid Production of Optical Transparency in Whole CNS Tissue.

Authors:  Jiwon Woo; Eunice Yoojin Lee; Hyo-Suk Park; Jeong Yoon Park; Yong Eun Cho
Journal:  J Vis Exp       Date:  2018-05-08       Impact factor: 1.355

3.  Gelatin embedding and LED autofluorescence reduction for rodent spinal cord histology.

Authors:  Nicholas F Nolta; Alexandra Liberti; Rohit Makol; Martin Han
Journal:  J Neurosci Methods       Date:  2020-09-09       Impact factor: 2.390

4.  Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy.

Authors:  Chen Li; Adele Moatti; Xuying Zhang; H Troy Ghashghaei; Alon Greenabum
Journal:  Biomed Opt Express       Date:  2021-07-22       Impact factor: 3.732

5.  Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning.

Authors:  Chen Li; Mani Ratnam Rai; H Troy Ghashghaei; Alon Greenbaum
Journal:  Biomed Opt Express       Date:  2022-01-21       Impact factor: 3.732

Review 6.  Hydrogel-Tissue Chemistry: Principles and Applications.

Authors:  Viviana Gradinaru; Jennifer Treweek; Kristin Overton; Karl Deisseroth
Journal:  Annu Rev Biophys       Date:  2018-05-20       Impact factor: 12.981

7.  Looking through Brains with Fast Passive CLARITY: Zebrafish, Rodents, Non-human Primates and Humans.

Authors:  Farzad Mortazavi; Alexander J Stankiewicz; Irina V Zhdanova
Journal:  Bio Protoc       Date:  2019-08-05

8.  Optical clearing reveals TNBS-induced morphological changes of VGLUT2-positive nerve fibers in mouse colorectum.

Authors:  Tiantian Guo; Shivam Patel; Dhruv Shah; Ling Chi; Sharareh Emadi; David M Pierce; Martin Han; Pablo R Brumovsky; Bin Feng
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2021-02-03       Impact factor: 4.052

9.  Use of Integrated Optical Clearing and 2-Photon Imaging to Investigate Sex Differences in Neuroimmune Interactions After Peripheral Nerve Injury.

Authors:  Thomas A Szabo-Pardi; Umar M Syed; Zachary W Castillo; Michael D Burton
Journal:  Front Cell Dev Biol       Date:  2021-02-18

10.  Aqueous-based tissue clearing in crustaceans.

Authors:  Alu Konno; Shigetoshi Okazaki
Journal:  Zoological Lett       Date:  2018-06-06       Impact factor: 2.836

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