Literature DB >> 28721939

Two faces of competition: target-mediated reverse signalling in microRNA and mitogen-activated protein kinase regulatory networks.

Yongjin Jang1, Min A Kim1, Yoosik Kim2.   

Abstract

Biomolecular regulatory networks are organised around hubs, which can interact with a large number of targets. These targets compete with each other for access to their common hubs, but whether the effect of this competition would be significant in magnitude and in function is not clear. In this review, the authors discuss recent in vivo studies that analysed the system level retroactive effects induced by target competition in microRNA and mitogen-activated protein kinase regulatory networks. The results of these studies suggest that downstream targets can regulate the overall state of their upstream regulators, and thus cannot be ignored in analysing biomolecular networks.

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Year:  2017        PMID: 28721939      PMCID: PMC8687413          DOI: 10.1049/iet-syb.2016.0042

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  103 in total

1.  A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.

Authors:  Robert J Johnston; Oliver Hobert
Journal:  Nature       Date:  2003-12-14       Impact factor: 49.962

2.  The temporal patterning microRNA let-7 regulates several transcription factors at the larval to adult transition in C. elegans.

Authors:  Helge Grosshans; Ted Johnson; Kristy L Reinert; Mark Gerstein; Frank J Slack
Journal:  Dev Cell       Date:  2005-03       Impact factor: 12.270

Review 3.  Scale-free networks in cell biology.

Authors:  Réka Albert
Journal:  J Cell Sci       Date:  2005-11-01       Impact factor: 5.285

4.  Combinatorial microRNA target predictions.

Authors:  Azra Krek; Dominic Grün; Matthew N Poy; Rachel Wolf; Lauren Rosenberg; Eric J Epstein; Philip MacMenamin; Isabelle da Piedade; Kristin C Gunsalus; Markus Stoffel; Nikolaus Rajewsky
Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

Review 5.  Getting connected: analysis and principles of biological networks.

Authors:  Xiaowei Zhu; Mark Gerstein; Michael Snyder
Journal:  Genes Dev       Date:  2007-05-01       Impact factor: 11.361

6.  Active turnover modulates mature microRNA activity in Caenorhabditis elegans.

Authors:  Saibal Chatterjee; Helge Grosshans
Journal:  Nature       Date:  2009-09-06       Impact factor: 49.962

7.  Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit.

Authors:  Ye Yuan; Bing Liu; Peng Xie; Michael Q Zhang; Yanda Li; Zhen Xie; Xiaowo Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-23       Impact factor: 11.205

8.  Docking motif interactions in MAP kinases revealed by hydrogen exchange mass spectrometry.

Authors:  Thomas Lee; Andrew N Hoofnagle; Yukihito Kabuyama; James Stroud; Xiaoshan Min; Elizabeth J Goldsmith; Lin Chen; Katheryn A Resing; Natalie G Ahn
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

9.  Data-driven modeling reconciles kinetics of ERK phosphorylation, localization, and activity states.

Authors:  Shoeb Ahmed; Kyle G Grant; Laura E Edwards; Anisur Rahman; Murat Cirit; Michael B Goshe; Jason M Haugh
Journal:  Mol Syst Biol       Date:  2014-01-30       Impact factor: 11.429

10.  Timescales and bottlenecks in miRNA-dependent gene regulation.

Authors:  Jean Hausser; Afzal Pasha Syed; Nathalie Selevsek; Erik van Nimwegen; Lukasz Jaskiewicz; Ruedi Aebersold; Mihaela Zavolan
Journal:  Mol Syst Biol       Date:  2013-12-03       Impact factor: 11.429

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