Literature DB >> 28720283

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX.

Serghei Mangul1, Lana S Martin2, Alexander Hoffmann3, Matteo Pellegrini4, Eleazar Eskin5.   

Abstract

Life and medical science researchers increasingly rely on applications that lack a graphical interface. Scientists who are not trained in computer science face an enormous challenge analyzing high-throughput data. We present a training model for use of command-line tools when the learner has little to no prior knowledge of UNIX.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  command line interface; computational biology; education; training

Mesh:

Year:  2017        PMID: 28720283     DOI: 10.1016/j.tibtech.2017.06.007

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   21.942


  4 in total

1.  Involving undergraduates in genomics research to narrow the education-research gap.

Authors:  Serghei Mangul; Lana S Martin; Eleazar Eskin
Journal:  Nat Biotechnol       Date:  2018-04-05       Impact factor: 54.908

2.  SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses.

Authors:  Tomáš Vetrovský; Petr Baldrian; Daniel Morais
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

3.  Recommendations to enhance rigor and reproducibility in biomedical research.

Authors:  Jaqueline J Brito; Jun Li; Jason H Moore; Casey S Greene; Nicole A Nogoy; Lana X Garmire; Serghei Mangul
Journal:  Gigascience       Date:  2020-06-01       Impact factor: 6.524

Review 4.  Taking Data Science to Heart: Next Scale of Gene Regulation.

Authors:  Douglas J Chapski; Thomas M Vondriska
Journal:  Curr Cardiol Rep       Date:  2021-03-15       Impact factor: 2.931

  4 in total

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