Literature DB >> 28719296

Analysis of Dengue Serotype 4 in Sri Lanka during the 2012-2013 Dengue Epidemic.

Anna Uehara1, Hasitha Aravinda Tissera2, Champica K Bodinayake3, Ananda Amarasinghe2, Ajith Nagahawatte3, L Gayani Tillekeratne4, Jie Cui5, Megan E Reller6, Paba Palihawadana2, Sunethra Gunasena7, Aruna Dharshan Desilva8, Annelies Wilder-Smith9,10, Duane J Gubler1, Christopher W Woods4, October M Sessions1.   

Abstract

The four serotypes of dengue virus (DENV-1, -2, -3, and -4) have had a rapidly expanding geographic range and are now endemic in over 100 tropical and subtropical countries. Sri Lanka has experienced periodic dengue outbreaks since the 1960s, but since 1989 epidemics have become progressively larger and associated with more severe disease. The dominant virus in the 2012 epidemic was DENV-1, but DENV-4 infections were also commonly observed. DENV-4 transmission was first documented in Sri Lanka when it was isolated from a traveler in 1978, but has been comparatively uncommon since dengue surveillance began in the early 1980s. To better understand the molecular epidemiology of DENV-4 infections in Sri Lanka, we conducted whole-genome sequencing on dengue patient samples from two different geographic locations. Phylogenetic analysis indicates that all sequenced DENV-4 strains belong to genotype 1 and are most closely related to DENV-4 viruses previously found in Sri Lanka and those recently found to be circulating in India and Pakistan.

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Year:  2017        PMID: 28719296      PMCID: PMC5508889          DOI: 10.4269/ajtmh.16-0540

Source DB:  PubMed          Journal:  Am J Trop Med Hyg        ISSN: 0002-9637            Impact factor:   2.345


  29 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  Molecular evolution and phylogeny of dengue-4 viruses.

Authors:  R S Lanciotti; D J Gubler; D W Trent
Journal:  J Gen Virol       Date:  1997-09       Impact factor: 3.891

3.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

4.  Natural attenuation of dengue virus type-2 after a series of island outbreaks: a retrospective phylogenetic study of events in the South Pacific three decades ago.

Authors:  Argon Steel; Duane J Gubler; Shannon N Bennett
Journal:  Virology       Date:  2010-09-30       Impact factor: 3.616

5.  Epidemiology of dengue in Sri Lanka before and after the emergence of epidemic dengue hemorrhagic fever.

Authors:  William B Messer; U Tissa Vitarana; Kamalanayani Sivananthan; Jayanthi Elvtigala; L D Preethimala; R Ramesh; Nalini Withana; Duane J Gubler; Aravinda M De Silva
Journal:  Am J Trop Med Hyg       Date:  2002-06       Impact factor: 2.345

6.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937

7.  Dengue, Urbanization and Globalization: The Unholy Trinity of the 21(st) Century.

Authors:  Duane J Gubler
Journal:  Trop Med Health       Date:  2011-08-25

Review 8.  Approaches to refining estimates of global burden and economics of dengue.

Authors:  Donald S Shepard; Eduardo A Undurraga; Miguel Betancourt-Cravioto; María G Guzmán; Scott B Halstead; Eva Harris; Rose Nani Mudin; Kristy O Murray; Roberto Tapia-Conyer; Duane J Gubler
Journal:  PLoS Negl Trop Dis       Date:  2014-11-20

9.  The global distribution and burden of dengue.

Authors:  Samir Bhatt; Peter W Gething; Oliver J Brady; Jane P Messina; Andrew W Farlow; Catherine L Moyes; John M Drake; John S Brownstein; Anne G Hoen; Osman Sankoh; Monica F Myers; Dylan B George; Thomas Jaenisch; G R William Wint; Cameron P Simmons; Thomas W Scott; Jeremy J Farrar; Simon I Hay
Journal:  Nature       Date:  2013-04-07       Impact factor: 49.962

10.  Severe dengue epidemics in Sri Lanka, 2003-2006.

Authors:  Nalaka Kanakaratne; Wahala M P B Wahala; William B Messer; Hasitha A Tissera; Aruna Shahani; Nihal Abeysinghe; Aravinda M de-Silva; Maya Gunasekera
Journal:  Emerg Infect Dis       Date:  2009-02       Impact factor: 6.883

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  4 in total

Review 1.  Infectious uveitis: an Asian perspective.

Authors:  Aniruddha Agarwal; Kanika Aggarwal; Vishali Gupta
Journal:  Eye (Lond)       Date:  2018-10-12       Impact factor: 3.775

2.  Novel tools for the surveillance and control of dengue: findings by the DengueTools research consortium.

Authors:  Annelies Wilder-Smith; Hasitha Tissera; Sazaly AbuBakar; Pattamaporn Kittayapong; James Logan; Andreas Neumayr; Joacim Rocklöv; Peter Byass; Valérie R Louis; Yesim Tozan; Eduardo Massad; Raman Preet
Journal:  Glob Health Action       Date:  2018       Impact factor: 2.640

3.  The evolutionary dynamics of DENV 4 genotype I over a 60-year period.

Authors:  Shaowei Sang; Jing Liu-Helmersson; Mikkel B M Quam; Hongning Zhou; Xiaofang Guo; Haixia Wu; Qiyong Liu
Journal:  PLoS Negl Trop Dis       Date:  2019-07-29

4.  Severe Dengue Epidemic, Sri Lanka, 2017.

Authors:  Hasitha A Tissera; Bernard D W Jayamanne; Rajendra Raut; Sakunthala M D Janaki; Yesim Tozan; Preshila C Samaraweera; Prasad Liyanage; Azhar Ghouse; Chaturaka Rodrigo; Aravinda M de Silva; Sumadhya D Fernando
Journal:  Emerg Infect Dis       Date:  2020-04       Impact factor: 6.883

  4 in total

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