Literature DB >> 28716716

Fiber tractography using machine learning.

Peter F Neher1, Marc-Alexandre Côté2, Jean-Christophe Houde3, Maxime Descoteaux4, Klaus H Maier-Hein5.   

Abstract

We present a fiber tractography approach based on a random forest classification and voting process, guiding each step of the streamline progression by directly processing raw diffusion-weighted signal intensities. For comparison to the state-of-the-art, i.e. tractography pipelines that rely on mathematical modeling, we performed a quantitative and qualitative evaluation with multiple phantom and in vivo experiments, including a comparison to the 96 submissions of the ISMRM tractography challenge 2015. The results demonstrate the vast potential of machine learning for fiber tractography.
Copyright © 2017 Elsevier Inc. All rights reserved.

Keywords:  Connectomics; Diffusion-weighted imaging; Fiber tractography; Machine learning

Mesh:

Year:  2017        PMID: 28716716     DOI: 10.1016/j.neuroimage.2017.07.028

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  12 in total

Review 1.  Challenges in diffusion MRI tractography - Lessons learned from international benchmark competitions.

Authors:  Kurt G Schilling; Alessandro Daducci; Klaus Maier-Hein; Cyril Poupon; Jean-Christophe Houde; Vishwesh Nath; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Magn Reson Imaging       Date:  2018-11-29       Impact factor: 2.546

2.  Limits to anatomical accuracy of diffusion tractography using modern approaches.

Authors:  Kurt G Schilling; Vishwesh Nath; Colin Hansen; Prasanna Parvathaneni; Justin Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; David Romascano; Gaëtan Rensonnet; Marco Pizzolato; Alice Bates; Elda Fischi; Jean-Philippe Thiran; Erick J Canales-Rodríguez; Chao Huang; Hongtu Zhu; Liming Zhong; Ryan Cabeen; Arthur W Toga; Francois Rheault; Guillaume Theaud; Jean-Christophe Houde; Jasmeen Sidhu; Maxime Chamberland; Carl-Fredrik Westin; Tim B Dyrby; Ragini Verma; Yogesh Rathi; M Okan Irfanoglu; Cibu Thomas; Carlo Pierpaoli; Maxime Descoteaux; Adam W Anderson; Bennett A Landman
Journal:  Neuroimage       Date:  2018-10-11       Impact factor: 6.556

Review 3.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

4.  Hierarchical Complexity of the Macro-Scale Neonatal Brain.

Authors:  Manuel Blesa; Paola Galdi; Simon R Cox; Gemma Sullivan; David Q Stoye; Gillian J Lamb; Alan J Quigley; Michael J Thrippleton; Javier Escudero; Mark E Bastin; Keith M Smith; James P Boardman
Journal:  Cereb Cortex       Date:  2021-03-05       Impact factor: 5.357

5.  A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging.

Authors:  Davood Karimi; Lana Vasung; Camilo Jaimes; Fedel Machado-Rivas; Shadab Khan; Simon K Warfield; Ali Gholipour
Journal:  Med Image Anal       Date:  2021-06-03       Impact factor: 13.828

6.  Toward nonparametric diffusion- T 1 characterization of crossing fibers in the human brain.

Authors:  Alexis Reymbaut; Jeffrey Critchley; Giuliana Durighel; Tim Sprenger; Michael Sughrue; Karin Bryskhe; Daniel Topgaard
Journal:  Magn Reson Med       Date:  2020-12-10       Impact factor: 4.668

7.  Parallel Transport Tractography.

Authors:  Dogu Baran Aydogan; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2021-02-02       Impact factor: 10.048

8.  The challenge of mapping the human connectome based on diffusion tractography.

Authors:  Klaus H Maier-Hein; Peter F Neher; Jean-Christophe Houde; Marc-Alexandre Côté; Eleftherios Garyfallidis; Jidan Zhong; Maxime Chamberland; Fang-Cheng Yeh; Ying-Chia Lin; Qing Ji; Wilburn E Reddick; John O Glass; David Qixiang Chen; Yuanjing Feng; Chengfeng Gao; Ye Wu; Jieyan Ma; Renjie He; Qiang Li; Carl-Fredrik Westin; Samuel Deslauriers-Gauthier; J Omar Ocegueda González; Michael Paquette; Samuel St-Jean; Gabriel Girard; François Rheault; Jasmeen Sidhu; Chantal M W Tax; Fenghua Guo; Hamed Y Mesri; Szabolcs Dávid; Martijn Froeling; Anneriet M Heemskerk; Alexander Leemans; Arnaud Boré; Basile Pinsard; Christophe Bedetti; Matthieu Desrosiers; Simona Brambati; Julien Doyon; Alessia Sarica; Roberta Vasta; Antonio Cerasa; Aldo Quattrone; Jason Yeatman; Ali R Khan; Wes Hodges; Simon Alexander; David Romascano; Muhamed Barakovic; Anna Auría; Oscar Esteban; Alia Lemkaddem; Jean-Philippe Thiran; H Ertan Cetingul; Benjamin L Odry; Boris Mailhe; Mariappan S Nadar; Fabrizio Pizzagalli; Gautam Prasad; Julio E Villalon-Reina; Justin Galvis; Paul M Thompson; Francisco De Santiago Requejo; Pedro Luque Laguna; Luis Miguel Lacerda; Rachel Barrett; Flavio Dell'Acqua; Marco Catani; Laurent Petit; Emmanuel Caruyer; Alessandro Daducci; Tim B Dyrby; Tim Holland-Letz; Claus C Hilgetag; Bram Stieltjes; Maxime Descoteaux
Journal:  Nat Commun       Date:  2017-11-07       Impact factor: 14.919

9.  A systematic review on the quantitative relationship between structural and functional network connectivity strength in mammalian brains.

Authors:  Milou Straathof; Michel Rt Sinke; Rick M Dijkhuizen; Willem M Otte
Journal:  J Cereb Blood Flow Metab       Date:  2018-10-30       Impact factor: 6.200

10.  On PTV definition for glioblastoma based on fiber tracking of diffusion tensor imaging data.

Authors:  Barbara Witulla; Nicole Goerig; Florian Putz; Benjamin Frey; Tobias Engelhorn; Arnd Dörfler; Michael Uder; Rainer Fietkau; Christoph Bert; Frederik Bernd Laun
Journal:  PLoS One       Date:  2020-01-06       Impact factor: 3.240

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