| Literature DB >> 28713228 |
Stefan E Payer1, Xiang Sheng2, Hannah Pollak1, Christiane Wuensch3,1, Georg Steinkellner3,4, Fahmi Himo2, Silvia M Glueck3,1, Kurt Faber1.
Abstract
The catalytic promiscuity of a ferulic acid decarboxylase from Enterobacter sp. (FDC_Es) and phenolic acid decarboxylases (PADs) for the asymmetric conjugate addition of water across the C=C bond of hydroxystyrenes was extended to the N-, C- and S-nucleophiles methoxyamine, cyanide and propanethiol to furnish the corresponding addition products in up to 91% ee. The products obtained from the biotransformation employing the most suitable enzyme/nucleophile pairs were isolated and characterized after optimizing the reaction conditions. Finally, a mechanistic rationale supported by quantum mechanical calculations for the highly (S)-selective addition of cyanide is proposed.Entities:
Keywords: biocatalysis; catalytic promiscuity; decarboxylase; hydration; hydroxystyrene; nucleophile addition
Year: 2017 PMID: 28713228 PMCID: PMC5488193 DOI: 10.1002/adsc.201700247
Source DB: PubMed Journal: Adv Synth Catal ISSN: 1615-4150 Impact factor: 5.837
Scheme 1Nucleophile promiscuity of a) hydroxynitrile lyase from Hevea brasiliensis (HNL_Hb, 1,2‐addition) and b) aspartase (1,4‐addition); c) electrophile promiscuity of malonate semialdehyde decarboxylase (MSAD) and 3‐chloroacrylic acid dehalogenase (CaaD, 1,4‐addition); d) “natural” (E)‐selective β‐(de)carboxylation with FDC/PADs; e) 1,6‐nucleophilic α‐hydration with FDC/PADs via a quinone‐methide electrophile.
Scheme 2Nucleophile screening with FDC_Es.
Nucleophile screening.[a]
| Entry | Nucleophile | Recovery of | Hydration | Nu‐addition |
|---|---|---|---|---|
| 1[d] |
| 9 | 17 | 98 |
| 2 |
| 19 | <1 | 91 |
| 3 |
| 14 | 12 | 95 |
| 4 |
| 79 | <1 | 10–35[e] |
| 5 |
| 60 | 30 | 44 |
| 6 |
| 9–85 | 52–78 | <1 |
| 7 |
| 76 to >99 | <1 | <1 |
| 8 |
| 5 | <1 | >99[f] |
[a] Screening conditions: lyophilized E. coli cells (20 mg mL−1) containing heterologously expressed FDC_Es, 1 (10 mM), 2a–2q (100 mM, 10 equiv.) in KPi buffer (100 mM, pH 7.5) and 1,2‐dimethoxyethane (DME, 10% v/v) as co‐solvent for water‐insoluble nucleophiles; incubation for 24 h at 30 °C with shaking at 700 rpm. Incomplete mass balance due to variations in recovery on analytical scale.
[b] Recovered substrate 1 and hydration product 4 determined by HPLC‐MS using calibration.
[c] Determined by GC‐MS analysis (±5%) of mass ions with m/z and fragmentation pattern matching the expected Nu‐adducts.
[d] NH3 and methylamine were unreactive.
[e] Nu addition product 3d was formed in varying amounts.
[f] Non‐enzymatic thiol‐ene reaction (32%) in absence of biocatalyst.
Scheme 3Conjugate 1,6‐addition of methoxyamine 2a and cyanide 2b.
Enzyme screening for the addition of 2a and 2b onto 1.[a]
| Nucleophile |
|
| |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Enzyme | Entry |
|
|
|
| Entry |
|
|
|
| |
| FDC_ | 1 | 93 | 17 | 6 | 39 | 8 | 82 | 64 | 4 | n.d. | |
| PAD_ | 2 | 48 | 3 | 6 | 10 | 9 | 5 | 68 | <1 | n.d. | |
| PAD_ | 3 | 11 |
| 4 | n.d. | 10 | 25 | 88 | 1 | n.d. | |
| PAD_ | 4 | 42 | 5 | 6 | 24 | 11 | 29 | 76 | <1 | n.d. | |
| PAD_ | 5 | 15 | 8 | 2 | n.d. | 12 | 23 | 85 | <1 | n.d. | |
| PAD_ | 6 | <1 | n.d. | 3 | n.d. | 13 | 6 | 71 | 8 | 89 | |
| PAD_ | 7 | 73 | 10 | 8 | 26 | 14 | 57 | 91 | <1 | n.d. | |
[a] Abbreviations: FDC_Enterobacter sp. (Es), PAD_Pantoea sp. (Ps), PAD_Mycobacterium columbiense (Mc), PAD_Methylobacterium sp. (Ms), PAD_Lactobacillus plantarum (Lp), PAD_Lactococcus lactis (Ll) and PAD_Bacillus amyloliquefaciens (Ba). Screening conditions: lyophilized E. coli cells (20 mg mL−1) containing the heterologously expressed FDC or PAD, 1 (10 mM), 2a or 2b (100 mM) in KPi buffer (50 mM, pH 7.0); incubation for 24 h at 30 °C and 700 rpm; n.d.=not determined due to low conversion.
Figure 1Active‐site of FDC_Es (PDB‐ID: 4UU3)28 with p‐vinylphenol (1) docked (green, docking performed with UCSF Chimera);29 residues targeted by mutagenesis for improvement of catalysis are highlighted in orange. (Putative) catalytic key residues are marked with an asterisk.
FDC_Es mutants in the addition of 2a and 2b.[a]
| Nucleophile |
|
| |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| FDC_ | Entry |
|
|
|
| Entry |
|
|
|
| |
| wt | 1 | 95 | 17 | 5 | 39 | 10 | 82 | 64 | <1 | n.d. | |
| I41A | 2 | 96 | 36 | 4 |
| 11 | 81 | 81 | <1 | n.d. | |
| L80A | 3 | 71 |
| 3 |
| 12 | 23 | 72 | <1 | n.d. | |
| L80A/V78A | 4 | 10 |
| <1 | n.d. | 13 | 53 | 85 | <1 | n.d. | |
| Y27F | 5 | 94 | 8 | 6 |
| 14 | 55 | 82 | <1 | n.d. | |
| Y39F | 6 | 95 |
| 5 | 12 | 15 | 16 | 72 | <1 | n.d. | |
| Y19F | 7 | <1 | n.d. | <1 | n.d. | 16 | <1 | n.d. | <1 | n.d. | |
| Y21F | 8 | <1 | n.d. | <1 | n.d. | 17 | 3 | n.d. | <1 | n.d. | |
| E72A | 9 | 8 |
| <1 | n.d. | 18 | 14 | 14 | <1 | n.d. | |
[a] Conditions: see Table 2; n.d.=not determined due to low conversion.
Preparative‐scale biotransformation, isolation and characterization of products.[a]
| FDC_ | Yield [%] | Yield [mg] |
| [α] | |
|---|---|---|---|---|---|
|
| I41A | 71[b] | 71 | 22 ( | −6.2° |
|
| wt | 71[c] | 44 | 85 ( | −12° |
|
| wt | 56[d] | 56 | 81 ( | −156° |
[a] Conditions: 20 mg mL−1 lyophilized E. coli whole cells with heterologously expressed FDC_Es variants in KPi‐buffer (100 mM).
[b] 1 (20 mM), 2a (5 equiv.), pH 7.0.
[c] 1 (10 mM), 2b (10 equiv.), pH 6.0.
[d] 1 (10 mM), TAPS‐buffer pH 8.5, DME (10% v/v), 2c (10 equiv.).
Figure 2(a) Schematic illustration of the active site model employed in the computational study. (b) Optimized structure of React, which corresponds to the lowest energy among the enzyme‐substrate complexes considered. During the geometry optimization of React, a proton moves spontaneously from Glu72 to the cyanide anion. Atoms with asterisks were fixed during geometry optimization. Distances are given in Å. For clarity, only substrate hydrogens and polar hydrogens are shown.
Scheme 4Proposed catalytic mechanism for the stereoselective addition of cyanide (2b) across 4‐hydroxystyrene (1).
Figure 3Optimized structures of the transition states involved in the lowest energy pathways leading to (S)‐product (TS1 and TS2) and (R)‐product (TS1′ and TS2′).
Figure 4Calculated energy profile for the PAD‐catalyzed addition of cyanide to p‐vinylphenol. The lowest‐energy pathways leading to both the (S)‐product (black line) and (R)‐product (red line) are shown.